NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10957.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10957.2 Public Homo sapiens 16 FOXF1 24 110 108 CCDS HistoryNCBI Gene:2294Re-query CCDS DB by CCDS ID:10957.2Re-query CCDS DB by GeneID:2294See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10957.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262426.6 ENSP00000262426.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262426.6Link to Ensembl Protein Viewer:ENSP00000262426.4Re-query CCDS DB by Nucleotide ID:ENST00000262426Re-query CCDS DB by Protein ID:ENSP00000262426
Original member Current member NCBI NM_001451.3 NP_001442.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001451.3Link to Protein Sequence:NP_001442.2Re-query CCDS DB by Nucleotide ID:NM_001451Re-query CCDS DB by Protein ID:NP_001442Link to BLAST:NP_001442.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001442.2 379 Q12946 379 100% 0 0

Chromosomal Locations for CCDS 10957.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 86510570 86511548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86512925 86513085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGTCTTCGGCGCCCGAGAAGCAGCAGCCACCGCACGGCGGCGGCGGCGGCGGCGGCGGGGGAGGCGGCG
CGGCCATGGACCCCGCGTCGTCCGGCCCGTCCAAGGCCAAGAAGACCAACGCCGGCATCCGGCGCCCGGA
GAAGCCGCCCTATTCCTACATCGCGCTCATCGTCATGGCCATCCAGAGTTCACCCACCAAGCGCCTGACG
CTGAGCGAGATCTACCAGTTCCTGCAGAGCCGCTTCCCCTTCTTCCGGGGCTCCTACCAGGGCTGGAAGA
ACTCCGTGCGCCACAACCTCTCGCTCAACGAGTGCTTCATCAAGCTACCCAAGGGCCTTGGGCGGCCCGG
CAAGGGCCACTACTGGACCATCGACCCGGCCAGCGAGTTCATGTTCGAGGAGGGCTCCTTTCGGCGGCGG
CCGCGCGGCTTCCGAAGGAAATGCCAGGCGCTCAAGCCCATGTACAGCATGATGAACGGGCTCGGCTTCA
ACCACCTCCCGGACACCTACGGCTTCCAGGGCTCGGCCGGCGGCCTCTCGTGCCCGCCCAACAGCCTGGC
GCTGGAGGGCGGCCTGGGCATGATGAACGGCCACTTGCCGGGCAACGTGGACGGCATGGCCCTGCCCAGC
CACTCGGTGCCCCACCTGCCTTCCAACGGCGGCCACTCGTACATGGGCGGCTGCGGCGGCGCGGCGGCCG
GCGAGTACCCGCACCACGACAGCTCGGTGCCCGCCTCCCCGCTGCTGCCCACCGGCGCCGGTGGGGTCAT
GGAGCCGCACGCCGTCTACTCGGGCTCGGCGGCGGCCTGGCCGCCCTCGGCGTCCGCGGCGCTCAACAGC
GGCGCCTCTTATATCAAGCAGCAGCCCCTGTCCCCCTGTAACCCCGCGGCCAACCCCCTGTCCGGCAGCC
TCTCCACGCACTCCCTGGAGCAGCCGTATCTGCACCAGAACAGCCACAACGCCCCAGCCGAGCTGCAAGG
CATCCCGCGGTATCACTCGCAGTCGCCCAGCATGTGTGACCGAAAGGAGTTTGTCTTCTCTTTCAACGCC
ATGGCGTCCTCTTCCATGCACTCGGCCGGCGGGGGCTCCTACTACCACCAGCAGGTCACCTACCAAGACA
TCAAGCCTTGCGTGATGTGA

Translation (379 aa):
MSSAPEKQQPPHGGGGGGGGGGGAAMDPASSGPSKAKKTNAGIRRPEKPPYSYIALIVMAIQSSPTKRLT
LSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEFMFEEGSFRRR
PRGFRRKCQALKPMYSMMNGLGFNHLPDTYGFQGSAGGLSCPPNSLALEGGLGMMNGHLPGNVDGMALPS
HSVPHLPSNGGHSYMGGCGGAAAGEYPHHDSSVPASPLLPTGAGGVMEPHAVYSGSAAAWPPSASAALNS
GASYIKQQPLSPCNPAANPLSGSLSTHSLEQPYLHQNSHNAPAELQGIPRYHSQSPSMCDRKEFVFSFNA
MASSSMHSAGGGSYYHQQVTYQDIKPCVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH