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Report for CCDS3849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3849.1 Public Homo sapiens 4 ZFP42 24 110 108 CCDS HistoryNCBI Gene:132625Re-query CCDS DB by CCDS ID:3849.1Re-query CCDS DB by GeneID:132625See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3849.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326866.5 ENSP00000317686.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326866.5Link to Ensembl Protein Viewer:ENSP00000317686.4Re-query CCDS DB by Nucleotide ID:ENST00000326866Re-query CCDS DB by Protein ID:ENSP00000317686
Original member Current member EBI ENST00000509524.5 ENSP00000424662.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509524.5Link to Ensembl Protein Viewer:ENSP00000424662.1Re-query CCDS DB by Nucleotide ID:ENST00000509524Re-query CCDS DB by Protein ID:ENSP00000424662
Original member Current member EBI ENST00000618147.1 ENSP00000483363.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618147.1Link to Ensembl Protein Viewer:ENSP00000483363.1Re-query CCDS DB by Nucleotide ID:ENST00000618147Re-query CCDS DB by Protein ID:ENSP00000483363
Original member Current member NCBI NM_001304358.2 NP_001291287.1 Accepted alive Link to Nucleotide Sequence:NM_001304358.2Link to Protein Sequence:NP_001291287.1Re-query CCDS DB by Nucleotide ID:NM_001304358Re-query CCDS DB by Protein ID:NP_001291287Link to BLAST:NP_001291287.1
Original member Current member NCBI NM_174900.5 NP_777560.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174900.5Link to Protein Sequence:NP_777560.2Re-query CCDS DB by Nucleotide ID:NM_174900Re-query CCDS DB by Protein ID:NP_777560Link to BLAST:NP_777560.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291287.1 310 Q96MM3 310 100% 0 0
NP_777560.2 310 Q96MM3 310 100% 0 0

Chromosomal Locations for CCDS 3849.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 188002808 188003740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAGCCAGCAACTGAAGAAACGGGCAAAGACAAGACACCAGAAAGGCCTGGGTGGAAGAGCCCCCAGTG
GGGCTAAGCCCAGGCAAGGCAAGTCAAGCCAAGACCTGCAGGCGGAAATAGAACCTGTCAGCGCGGTGTG
GGCCTTATGTGATGGCTATGTGTGCTATGAGCCTGGCCCTCAGGCTCTCGGAGGGGATGATTTCTCAGAC
TGTTACATAGAATGCGTCATAAGGGGTGAGTTTTCTCAACCCATCCTGGAAGAGGACTCACTTTTTGAGT
CCTTGGAATACCTAAAGAAAGGATCAGAACAACAGCTTTCTCAAAAGGTTTTCGAAGCAAGCTCCCTTGA
ATGTTCTTTGGAATACATGAAAAAAGGGGTAAAGAAAGAGCTTCCACAAAAGATAGTTGGAGAGAATTCG
CTTGAGTATTCTGAGTACATGACAGGCAAGAAGCTTCCGCCTGGAGGAATACCTGGCATTGACCTATCAG
ATCCTAAACAGCTCGCAGAATTTGCTAGAAAGAAGCCCCCCATAAATAAAGAATATGACAGTCTGAGCGC
AATCGCTTGTCCTCAGAGTGGATGCACTAGGAAGTTGAGGAATAGAGCTGCCCTGAGAAAGCATCTCCTC
ATTCATGGTCCCCGAGACCACGTCTGTGCGGAATGTGGGAAAGCGTTCGTTGAGAGCTCAAAACTAAAGA
GACATTTCCTGGTTCATACTGGAGAGAAGCCGTTTCGGTGCACTTTTGAAGGGTGCGGAAAGCGCTTCTC
TCTGGACTTTAATTTGCGTACGCACGTGCGCATCCACACGGGGGAGAAACGTTTCGTGTGTCCCTTTCAA
GGCTGCAACAGGAGGTTTATTCAGTCAAATAACCTGAAAGCCCACATCCTAACGCATGCAAATACGAACA
AGAATGAACAAGAGGGAAAGTAG

Translation (310 aa):
MSQQLKKRAKTRHQKGLGGRAPSGAKPRQGKSSQDLQAEIEPVSAVWALCDGYVCYEPGPQALGGDDFSD
CYIECVIRGEFSQPILEEDSLFESLEYLKKGSEQQLSQKVFEASSLECSLEYMKKGVKKELPQKIVGENS
LEYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARKKPPINKEYDSLSAIACPQSGCTRKLRNRAALRKHLL
IHGPRDHVCAECGKAFVESSKLKRHFLVHTGEKPFRCTFEGCGKRFSLDFNLRTHVRIHTGEKRFVCPFQ
GCNRRFIQSNNLKAHILTHANTNKNEQEGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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