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Report for CCDS6018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6018.1 Public Homo sapiens 8 NPM2 24 110 108 CCDS HistoryNCBI Gene:10361Re-query CCDS DB by CCDS ID:6018.1Re-query CCDS DB by GeneID:10361See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6018.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289820.10 ENSP00000289820.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000289820.10Link to Ensembl Protein Viewer:ENSP00000289820.6Re-query CCDS DB by Nucleotide ID:ENST00000289820Re-query CCDS DB by Protein ID:ENSP00000289820
Original member Current member EBI ENST00000397940.5 ENSP00000381032.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397940.5Link to Ensembl Protein Viewer:ENSP00000381032.1Re-query CCDS DB by Nucleotide ID:ENST00000397940Re-query CCDS DB by Protein ID:ENSP00000381032
Original member Current member EBI ENST00000518119.6 ENSP00000427741.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000518119.6Link to Ensembl Protein Viewer:ENSP00000427741.1Re-query CCDS DB by Nucleotide ID:ENST00000518119Re-query CCDS DB by Protein ID:ENSP00000427741
Original member Current member EBI ENST00000521157.5 ENSP00000429413.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521157.5Link to Ensembl Protein Viewer:ENSP00000429413.1Re-query CCDS DB by Nucleotide ID:ENST00000521157Re-query CCDS DB by Protein ID:ENSP00000429413
Original member Current member EBI ENST00000621538.4 ENSP00000481077.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621538.4Link to Ensembl Protein Viewer:ENSP00000481077.1Re-query CCDS DB by Nucleotide ID:ENST00000621538Re-query CCDS DB by Protein ID:ENSP00000481077
Original member Current member NCBI NM_001286680.2 NP_001273609.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001286680.2Link to Protein Sequence:NP_001273609.1Re-query CCDS DB by Nucleotide ID:NM_001286680Re-query CCDS DB by Protein ID:NP_001273609Link to BLAST:NP_001273609.1
Original member NCBI NM_182795.1 NP_877724.1 Updated not alive Link to Nucleotide Sequence:NM_182795.1Link to Protein Sequence:NP_877724.1Re-query CCDS DB by Nucleotide ID:NM_182795Re-query CCDS DB by Protein ID:NP_877724
Current member NCBI NM_182795.2 NP_877724.1 Accepted alive Link to Nucleotide Sequence:NM_182795.2Link to Protein Sequence:NP_877724.1Re-query CCDS DB by Nucleotide ID:NM_182795Re-query CCDS DB by Protein ID:NP_877724Link to BLAST:NP_877724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273609.1 214 Q86SE8-1 214 100% 0 0
NP_877724.1 214 Q86SE8-1 214 100% 0 0

Chromosomal Locations for CCDS 6018.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22025249 22025306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22025436 22025521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22025647 22025772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22033130 22033223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22034109 22034275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22034510 22034544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22036493 22036526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22036638 22036682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGAATCTCAGTAGCGCCAGTAGCACGGAGGAAAAGGCAGTGACGACCGTGCTCTGGGGCTGCGAGCTCA
GTCAGGAGAGGCGGACTTGGACCTTCAGACCCCAGCTGGAGGGGAAGCAGAGCTGCAGGCTGTTGCTTCA
TACGATTTGCTTGGGGGAGAAAGCCAAAGAGGAGATGCATCGCGTGGAGATCCTGCCCCCAGCAAACCAG
GAGGACAAGAAGATGCAGCCGGTCACCATTGCCTCACTCCAGGCCTCAGTCCTCCCCATGGTCTCCATGG
TAGGAGTGCAGCTTTCTCCCCCAGTTACTTTCCAGCTCCGGGCTGGCTCAGGACCCGTGTTCCTCAGTGG
CCAGGAACGTTATGAAGCATCAGACCTAACCTGGGAGGAGGAGGAGGAAGAAGAAGGGGAGGAGGAGGAA
GAGGAAGAGGAAGATGATGAGGATGAGGATGCAGATATATCTCTGGAGGAGCAAAGCCCTGTCAAACAAG
TCAAAAGGCTGGTGCCCCAGAAGCAGGCGAGCGTGGCTAAGAAAAAAAAGCTGGAAAAAGAAGAAGAGGA
AATAAGAGCCAGCGTTAGAGACAAGAGCCCTGTGAAAAAGGCCAAAGCCACAGCCAGAGCCAAGAAGCCA
GGATTCAAGAAATGA

Translation (214 aa):
MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMHRVEILPPANQ
EDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQERYEASDLTWEEEEEEEGEEEE
EEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKKLEKEEEEIRASVRDKSPVKKAKATARAKKP
GFKK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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