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Report for CCDS34444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34444.1 Public Homo sapiens 6 TSPO2 24 110 108 CCDS HistoryNCBI Gene:222642Re-query CCDS DB by CCDS ID:34444.1Re-query CCDS DB by GeneID:222642See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34444.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373161.6 ENSP00000362255.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373161.6Link to Ensembl Protein Viewer:ENSP00000362255.1Re-query CCDS DB by Nucleotide ID:ENST00000373161Re-query CCDS DB by Protein ID:ENSP00000362255
Original member Current member EBI ENST00000470917.1 ENSP00000419985.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000470917.1Link to Ensembl Protein Viewer:ENSP00000419985.1Re-query CCDS DB by Nucleotide ID:ENST00000470917Re-query CCDS DB by Protein ID:ENSP00000419985
Original member Current member NCBI NM_001010873.3 NP_001010873.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010873.3Link to Protein Sequence:NP_001010873.1Re-query CCDS DB by Nucleotide ID:NM_001010873Re-query CCDS DB by Protein ID:NP_001010873Link to BLAST:NP_001010873.1
Original member Current member NCBI NM_001159726.1 NP_001153198.1 Accepted alive Link to Nucleotide Sequence:NM_001159726.1Link to Protein Sequence:NP_001153198.1Re-query CCDS DB by Nucleotide ID:NM_001159726Re-query CCDS DB by Protein ID:NP_001153198Link to BLAST:NP_001153198.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010873.1 170 Q5TGU0-1 170 100% 0 0
NP_001153198.1 170 Q5TGU0-1 170 100% 0 0

Chromosomal Locations for CCDS 34444.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41042986 41043158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41043557 41043698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41043940 41044137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGCGGCTTCAAGGGGCTATCTTTGTGCTCCTGCCCCACCTGGGGCCCATCCTGGTCTGGCTGTTCACTC
GTGATCACATGTCTGGTTGGTGTGAGGGCCCGAGGATGCTGTCCTGGTGCCCATTCTACAAAGTCTTATT
GCTTGTACAGACAGCCATCTACTCTGTCGTGGGCTATGCCTCCTACCTGGTGTGGAAGGACCTGGGAGGG
GGCTTGGGGTGGCCCCTGGCCCTGCCTCTTGGCCTCTATGCTGTTCAGCTCACCATCAGCTGGACTGTCC
TGGTTCTCTTTTTCACAGTCCACAACCCTGGTCTGGCCCTGCTGCACCTGCTGCTGCTGTATGGGCTGGT
GGTGAGCACAGCACTGATCTGGCATCCCATCAACAAACTGGCTGCCCTGTTACTGCTGCCCTACCTAGCC
TGGCTCACCGTGACTTCAGCCCTCACCTACCACCTGTGGAGGGACAGCCTTTGTCCAGTGCACCAGCCTC
AGCCCACGGAGAAGAGTGACTGA

Translation (170 aa):
MRLQGAIFVLLPHLGPILVWLFTRDHMSGWCEGPRMLSWCPFYKVLLLVQTAIYSVVGYASYLVWKDLGG
GLGWPLALPLGLYAVQLTISWTVLVLFFTVHNPGLALLHLLLLYGLVVSTALIWHPINKLAALLLLPYLA
WLTVTSALTYHLWRDSLCPVHQPQPTEKSD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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