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Report for CCDS42441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42441.1 Public Homo sapiens 18 HMSD 24 110 108 CCDS HistoryNCBI Gene:284293Re-query CCDS DB by CCDS ID:42441.1Re-query CCDS DB by GeneID:284293See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42441.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408945.5 ENSP00000386207.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000408945.5Link to Ensembl Protein Viewer:ENSP00000386207.3Re-query CCDS DB by Nucleotide ID:ENST00000408945Re-query CCDS DB by Protein ID:ENSP00000386207
Original member Current member NCBI NM_001123366.2 NP_001116838.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001123366.2Link to Protein Sequence:NP_001116838.1Re-query CCDS DB by Nucleotide ID:NM_001123366Re-query CCDS DB by Protein ID:NP_001116838Link to BLAST:NP_001116838.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116838.1 139 A8MTL9-1 139 100% 0 0

Chromosomal Locations for CCDS 42441.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 63953456 63953527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63954408 63954557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63960158 63960355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGAGCATATCATCAGCCTTGGCCATGGTTTTCATGGGGGCAAAGGGAAACACTGCAGCTCAGATGTCTC
AGGCACTTTGTTTTAGTAAAATCGGAGGTGAAGATGGAGATATTCATCGAGGTTTTCAGTCACTTCTTGT
TGCAATTAACAGAACTGACACTGAATATGTGCTTAGAACTGCCAACGGGCTCTTTGGAGAAAAGTCTTAT
GATTTCCTCACAGGTTTTACAGATTCCTGTGGCAAATTCTACCAAGCAACGATAAAACAGCTAGACTTTG
TGAATGATACAGAGAAGTCCACAACACGTGTAAACTCCTGGGTTGCTGATAAAACTAAAGGTGAAAATAT
ATTGTTATTCTATTTCGATAATATTTTAAACAGTTTTATAGTCAGTTCTTTACAAAACTGTCAAATATAA

Translation (139 aa):
MSISSALAMVFMGAKGNTAAQMSQALCFSKIGGEDGDIHRGFQSLLVAINRTDTEYVLRTANGLFGEKSY
DFLTGFTDSCGKFYQATIKQLDFVNDTEKSTTRVNSWVADKTKGENILLFYFDNILNSFIVSSLQNCQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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