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Report for CCDS14245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14245.1 Public Homo sapiens X SRPX 24 110 108 CCDS HistoryNCBI Gene:8406Re-query CCDS DB by CCDS ID:14245.1Re-query CCDS DB by GeneID:8406See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14245.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378533.4 ENSP00000367794.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378533.4Link to Ensembl Protein Viewer:ENSP00000367794.3Re-query CCDS DB by Nucleotide ID:ENST00000378533Re-query CCDS DB by Protein ID:ENSP00000367794
Original member Current member NCBI NM_006307.5 NP_006298.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006307.5Link to Protein Sequence:NP_006298.1Re-query CCDS DB by Nucleotide ID:NM_006307Re-query CCDS DB by Protein ID:NP_006298Link to BLAST:NP_006298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006298.1 464 P78539-1 464 100% 0 0

Chromosomal Locations for CCDS 14245.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38149711 38149894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38154462 38154583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38156896 38157029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38160017 38160196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38160933 38161054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38164769 38164895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38171881 38172057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38174160 38174351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38178285 38178344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38220696 38220792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGGGAGCCCCGCACATCGGCCCGCGCTGCTGCTGCTGCTGCCGCCTCTGCTGCTGCTGCTGCTGCTGC
GCGTCCCGCCCAGCCGCAGCTTCCCAGGATCGGGAGACTCACCACTAGAAGACGATGAAGTCGGGTATTC
ACACCCTAGATATAAAGATACCCCGTGGTGCTCCCCCATCAAGGTGAAGTATGGGGATGTGTACTGCAGG
GCCCCTCAAGGAGGATACTACAAAACAGCCCTGGGAACCAGGTGCGACATTCGCTGCCAGAAGGGCTACG
AGCTGCATGGCTCTTCCCTACTGATCTGCCAGTCAAACAAACGATGGTCTGACAAGGTCATCTGCAAACA
AAAGCGATGTCCTACCCTTGCCATGCCAGCAAATGGAGGGTTTAAGTGTGTAGATGGTGCCTACTTTAAC
TCCCGGTGTGAGTATTATTGTTCACCAGGATACACGTTGAAAGGGGAGCGGACCGTCACATGTATGGACA
ACAAGGCCTGGAGCGGCCGGCCAGCCTCCTGTGTGGATATGGAACCTCCTAGAATCAAGTGCCCAAGTGT
GAAGGAACGCATTGCAGAACCCAACAAACTGACAGTCCGGGTGTCCTGGGAGACACCCGAAGGAAGAGAC
ACAGCAGATGGAATTCTTACTGATGTCATTCTAAAAGGCCTCCCCCCAGGCTCCAACTTTCCAGAAGGAG
ACCACAAGATCCAGTACACAGTCTATGACAGAGCTGAGAATAAGGGCACTTGCAAATTTCGAGTTAAAGT
AAGAGTCAAACGCTGTGGCAAACTCAATGCCCCAGAGAATGGTTACATGAAGTGCTCCAGCGACGGTGAT
AATTATGGAGCCACCTGTGAGTTCTCCTGCATCGGCGGCTATGAGCTCCAGGGTAGCCCTGCCCGAGTAT
GTCAATCCAACCTGGCTTGGTCTGGCACGGAGCCCACCTGTGCAGCCATGAACGTCAATGTGGGTGTCAG
AACGGCAGCTGCACTTCTGGATCAGTTTTATGAGAAAAGGAGACTCCTCATTGTGTCCACACCCACAGCC
CGAAACCTCCTTTACCGGCTCCAGCTAGGAATGCTGCAGCAAGCACAGTGTGGCCTTGATCTTCGACACA
TCACCGTGGTGGAGCTGGTGGGTGTGTTCCCGACTCTCATTGGCAGGATAGGAGCAAAGATTATGCCTCC
AGCCCTAGCGCTGCAGCTCAGGCTGTTGCTGCGAATCCCACTCTACTCCTTCAGTATGGTGCTAGTGGAT
AAGCATGGCATGGACAAAGAGCGCTATGTCTCCCTGGTGATGCCTGTGGCCCTGTTCAACCTGATTGACA
CTTTTCCCTTGAGAAAAGAAGAGATGGTCCTACAAGCCGAAATGAGCCAGACCTGTAACACCTGA

Translation (464 aa):
MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPIKVKYGDVYCR
APQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKQKRCPTLAMPANGGFKCVDGAYFN
SRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDMEPPRIKCPSVKERIAEPNKLTVRVSWETPEGRD
TADGILTDVILKGLPPGSNFPEGDHKIQYTVYDRAENKGTCKFRVKVRVKRCGKLNAPENGYMKCSSDGD
NYGATCEFSCIGGYELQGSPARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEKRRLLIVSTPTA
RNLLYRLQLGMLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRIPLYSFSMVLVD
KHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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