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Report for CCDS55253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55253.1 Public Homo sapiens 8 RALYL 24 110 108 CCDS HistoryNCBI Gene:138046Re-query CCDS DB by CCDS ID:55253.1Re-query CCDS DB by GeneID:138046See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55253.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000521695.5 ENSP00000428667.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521695.5Link to Ensembl Protein Viewer:ENSP00000428667.1Re-query CCDS DB by Nucleotide ID:ENST00000521695Re-query CCDS DB by Protein ID:ENSP00000428667
Original member Current member EBI ENST00000521268.6 ENSP00000430367.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000521268.6Link to Ensembl Protein Viewer:ENSP00000430367.1Re-query CCDS DB by Nucleotide ID:ENST00000521268Re-query CCDS DB by Protein ID:ENSP00000430367
Original member Current member EBI ENST00000522455.5 ENSP00000430394.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522455.5Link to Ensembl Protein Viewer:ENSP00000430394.1Re-query CCDS DB by Nucleotide ID:ENST00000522455Re-query CCDS DB by Protein ID:ENSP00000430394
Original member Current member NCBI NM_001100392.3 NP_001093862.1 Accepted alive Link to Nucleotide Sequence:NM_001100392.3Link to Protein Sequence:NP_001093862.1Re-query CCDS DB by Nucleotide ID:NM_001100392Re-query CCDS DB by Protein ID:NP_001093862Link to BLAST:NP_001093862.1
Original member Current member NCBI NM_001100393.3 NP_001093863.1 Accepted alive Link to Nucleotide Sequence:NM_001100393.3Link to Protein Sequence:NP_001093863.1Re-query CCDS DB by Nucleotide ID:NM_001100393Re-query CCDS DB by Protein ID:NP_001093863Link to BLAST:NP_001093863.1
Original member Current member NCBI NM_001354305.2 NP_001341234.1 Accepted alive Link to Nucleotide Sequence:NM_001354305.2Link to Protein Sequence:NP_001341234.1Re-query CCDS DB by Nucleotide ID:NM_001354305Re-query CCDS DB by Protein ID:NP_001341234Link to BLAST:NP_001341234.1
Original member Current member NCBI NM_001354306.2 NP_001341235.1 Accepted alive Link to Nucleotide Sequence:NM_001354306.2Link to Protein Sequence:NP_001341235.1Re-query CCDS DB by Nucleotide ID:NM_001354306Re-query CCDS DB by Protein ID:NP_001341235Link to BLAST:NP_001341235.1
Original member Current member NCBI NM_001354308.2 NP_001341237.1 Accepted alive Link to Nucleotide Sequence:NM_001354308.2Link to Protein Sequence:NP_001341237.1Re-query CCDS DB by Nucleotide ID:NM_001354308Re-query CCDS DB by Protein ID:NP_001341237Link to BLAST:NP_001341237.1
Original member Current member NCBI NM_001354316.2 NP_001341245.1 Accepted alive Link to Nucleotide Sequence:NM_001354316.2Link to Protein Sequence:NP_001341245.1Re-query CCDS DB by Nucleotide ID:NM_001354316Re-query CCDS DB by Protein ID:NP_001341245Link to BLAST:NP_001341245.1
Original member Current member NCBI NM_001354320.2 NP_001341249.1 Accepted alive Link to Nucleotide Sequence:NM_001354320.2Link to Protein Sequence:NP_001341249.1Re-query CCDS DB by Nucleotide ID:NM_001354320Re-query CCDS DB by Protein ID:NP_001341249Link to BLAST:NP_001341249.1
Original member Current member NCBI NM_001354325.2 NP_001341254.1 Accepted alive Link to Nucleotide Sequence:NM_001354325.2Link to Protein Sequence:NP_001341254.1Re-query CCDS DB by Nucleotide ID:NM_001354325Re-query CCDS DB by Protein ID:NP_001341254Link to BLAST:NP_001341254.1
Original member Current member NCBI NM_173848.7 NP_776247.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173848.7Link to Protein Sequence:NP_776247.3Re-query CCDS DB by Nucleotide ID:NM_173848Re-query CCDS DB by Protein ID:NP_776247Link to BLAST:NP_776247.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093862.1 291 Q86SE5-1 291 100% 0 0
NP_001093863.1 291 Q86SE5-1 291 100% 0 0
NP_001341234.1 291 Q86SE5-1 291 100% 0 0
NP_001341235.1 291 Q86SE5-1 291 100% 0 0
NP_001341237.1 291 Q86SE5-1 291 100% 0 0
NP_001341245.1 291 Q86SE5-1 291 100% 0 0
NP_001341249.1 291 Q86SE5-1 291 100% 0 0
NP_001341254.1 291 Q86SE5-1 291 100% 0 0
NP_776247.3 291 Q86SE5-1 291 100% 0 0

Chromosomal Locations for CCDS 55253.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84529322 84529577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84774579 84774654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84804770 84804802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84849980 84850027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84862296 84862453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84873284 84873397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84887604 84887776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84920894 84920911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGACTGGCAAAACACAGACCAGCAACGTCACCAATAAGAATGACCCCAAGTCCATCAACTCCCGTGTTT
TCATCGGCAATCTAAATACGGCAATTGTCAAGAAAGTTGACATTGAAGCCATTTTTTCAAAGTATGGAAA
AATAGTTGGATGTTCCGTTCACAAAGGTTATGCATTTGTACAGTACATGAGTGAGCGACATGCAAGAGCT
GCAGTGGCTGGAGAAAATGCCAGAGTCATCGCCGGCCAACCACTTGATATCAACATGGCAGGAGAGCCCA
AACCATACAGACCAAAACCTGGAAACAAGAGGCCCCTTTCTGCACTTTACAGACTTGAATCAAAGGAACC
TTTCCTGTCTGTTGGCGGTTATGTCTTTGACTATGATTACTACAGAGATGATTTCTACAATCGGTTATTT
GATTACCACGGGCGTGTGCCTCCACCTCCCCGTGCAGTAATTCCGCTGAAGCGTCCCAGAGTGGCAGTCA
CAACGACTCGCAGGGGGAAAGGAGTCTTTTCCATGAAAGGTGGATCGAGATCTACTGCCAGTGGGTCAAC
AGGTTCTAAATTGAAATCAGATGAGTTACAGACCATCAAGAAAGAATTAACCCAGATCAAAACTAAAATT
GACTCCTTGCTAGGGCGCCTGGAGAAGATTGAGAAACAGCAGAAGGCGGAGGCAGAAGCTCAGAAGAAGC
AATTGGAAGAGAGTCTAGTGCTGATCCAAGAGGAATGTGTGTCAGAGATTGCAGATCACTCTACAGAGGA
GCCTGCTGAAGGAGGGCCAGATGCCGATGGAGAAGAGATGACAGATGGGATAGAGGAGGACTTCGATGAA
GATGGGGGTCATGAGCTGTTTCTACAGATAAAGTGA

Translation (291 aa):
MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARA
AVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLF
DYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKI
DSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDE
DGGHELFLQIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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