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Report for CCDS34755.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34755.1 Public Homo sapiens 7 PODXL 24 110 108 CCDS HistoryNCBI Gene:5420Re-query CCDS DB by CCDS ID:34755.1Re-query CCDS DB by GeneID:5420See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34755.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378555.8 ENSP00000367817.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378555.8Link to Ensembl Protein Viewer:ENSP00000367817.3Re-query CCDS DB by Nucleotide ID:ENST00000378555Re-query CCDS DB by Protein ID:ENSP00000367817
Original member Current member NCBI NM_001018111.3 NP_001018121.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001018111.3Link to Protein Sequence:NP_001018121.1Re-query CCDS DB by Nucleotide ID:NM_001018111Re-query CCDS DB by Protein ID:NP_001018121Link to BLAST:NP_001018121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001018121.1 558 O00592-1 558 100% 0 0

Chromosomal Locations for CCDS 34755.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 131504311 131504508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131505868 131506035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131506260 131506321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131506579 131506726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131508951 131509028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131509365 131509585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131510236 131510331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131510828 131511433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131556260 131556359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGCGCTGCGCGCTGGCGCTCTCGGCGCTGCTGCTACTGTTGTCAACGCCGCCGCTGCTGCCGTCGTCGC
CGTCGCCGTCGCCGTCGCCCTCCCAGAATGCAACCCAGACTACTACGGACTCATCTAACAAAACAGCACC
GACTCCAGCATCCAGTGTCACCATCATGGCTACAGATACAGCCCAGCAGAGCACAGTCCCCACTTCCAAG
GCCAACGAAATCTTGGCCTCGGTCAAGGCGACCACCCTTGGTGTATCCAGTGACTCACCGGGGACTACAA
CCCTGGCTCAGCAAGTCTCAGGCCCAGTCAACACTACCGTGGCTAGAGGAGGCGGCTCAGGCAACCCTAC
TACCACCATCGAGAGCCCCAAGAGCACAAAAAGTGCAGACACCACTACAGTTGCAACCTCCACAGCCACA
GCTAAACCTAACACCACAAGCAGCCAGAATGGAGCAGAAGATACAACAAACTCTGGGGGGAAAAGCAGCC
ACAGTGTGACCACAGACCTCACATCCACTAAGGCAGAACATCTGACGACCCCTCACCCTACAAGTCCACT
TAGCCCCCGACAACCCACTTCGACGCATCCTGTGGCCACCCCAACAAGCTCGGGACATGACCATCTTATG
AAAATTTCAAGCAGTTCAAGCACTGTGGCTATCCCTGGCTACACCTTCACAAGCCCGGGGATGACCACCA
CCCTACTAGAGACAGTGTTTCACCATGTCAGCCAGGCTGGTCTTGAACTCCTGACCTCGGGTGATCTGCC
CACCTTGGCCTCCCAAAGTGCTGGGATTACAGCGTCATCGGTTATCTCGCAAAGAACTCAACAGACCTCC
AGTCAGATGCCAGCCAGCTCTACGGCCCCTTCCTCCCAGGAGACAGTGCAGCCCACGAGCCCGGCAACGG
CATTGAGAACACCTACCCTGCCAGAGACCATGAGCTCCAGCCCCACAGCAGCATCAACTACCCACCGATA
CCCCAAAACACCTTCTCCCACTGTGGCTCATGAGAGTAACTGGGCAAAGTGTGAGGATCTTGAGACACAG
ACACAGAGTGAGAAGCAGCTCGTCCTGAACCTCACAGGAAACACCCTCTGTGCAGGGGGCGCTTCGGATG
AGAAATTGATCTCACTGATATGCCGAGCAGTCAAAGCCACCTTCAACCCGGCCCAAGATAAGTGCGGCAT
ACGGCTGGCATCTGTTCCAGGAAGTCAGACCGTGGTCGTCAAAGAAATCACTATTCACACTAAGCTCCCT
GCCAAGGATGTGTACGAGCGGCTGAAGGACAAATGGGATGAACTAAAGGAGGCAGGGGTCAGTGACATGA
AGCTAGGGGACCAGGGGCCACCGGAGGAGGCCGAGGACCGCTTCAGCATGCCCCTCATCATCACCATCGT
CTGCATGGCATCATTCCTGCTCCTCGTGGCGGCCCTCTATGGCTGCTGCCACCAGCGCCTCTCCCAGAGG
AAGGACCAGCAGCGGCTAACAGAGGAGCTGCAGACAGTGGAGAATGGTTACCATGACAACCCAACACTGG
AAGTGATGGAGACCTCTTCTGAGATGCAGGAGAAGAAGGTGGTCAGCCTCAACGGGGAGCTGGGGGACAG
CTGGATCGTCCCTCTGGACAACCTGACCAAGGACGACCTGGATGAGGAGGAAGACACACACCTCTAG

Translation (558 aa):
MRCALALSALLLLLSTPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSK
ANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGNPTTTIESPKSTKSADTTTVATSTAT
AKPNTTSSQNGAEDTTNSGGKSSHSVTTDLTSTKAEHLTTPHPTSPLSPRQPTSTHPVATPTSSGHDHLM
KISSSSSTVAIPGYTFTSPGMTTTLLETVFHHVSQAGLELLTSGDLPTLASQSAGITASSVISQRTQQTS
SQMPASSTAPSSQETVQPTSPATALRTPTLPETMSSSPTAASTTHRYPKTPSPTVAHESNWAKCEDLETQ
TQSEKQLVLNLTGNTLCAGGASDEKLISLICRAVKATFNPAQDKCGIRLASVPGSQTVVVKEITIHTKLP
AKDVYERLKDKWDELKEAGVSDMKLGDQGPPEEAEDRFSMPLIITIVCMASFLLLVAALYGCCHQRLSQR
KDQQRLTEELQTVENGYHDNPTLEVMETSSEMQEKKVVSLNGELGDSWIVPLDNLTKDDLDEEEDTHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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