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Report for CCDS12201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12201.1 Public Homo sapiens 19 RAB11B 24 110 108 CCDS HistoryNCBI Gene:9230Re-query CCDS DB by CCDS ID:12201.1Re-query CCDS DB by GeneID:9230See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328024.11 ENSP00000333547.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328024.11Link to Ensembl Protein Viewer:ENSP00000333547.5Re-query CCDS DB by Nucleotide ID:ENST00000328024Re-query CCDS DB by Protein ID:ENSP00000333547
Original member Current member NCBI NM_004218.4 NP_004209.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004218.4Link to Protein Sequence:NP_004209.2Re-query CCDS DB by Nucleotide ID:NM_004218Re-query CCDS DB by Protein ID:NP_004209Link to BLAST:NP_004209.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004209.2 218 Q15907-1 218 100% 0 0

Chromosomal Locations for CCDS 12201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8390417 8390456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8399863 8400058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8402086 8402279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8402485 8402565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8403413 8403558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGGGACCCGGGACGACGAGTACGACTACCTATTCAAAGTGGTGCTCATCGGGGACTCAGGCGTGGGCA
AGAGCAACCTGCTGTCGCGCTTCACCCGCAACGAGTTCAACCTGGAGAGCAAGAGCACCATCGGCGTGGA
GTTCGCCACCCGCAGCATCCAGGTGGACGGCAAGACCATCAAGGCGCAGATCTGGGACACCGCTGGCCAG
GAGCGCTACCGCGCCATCACCTCCGCGTACTACCGTGGTGCAGTGGGCGCCCTGCTGGTGTACGACATCG
CCAAGCACCTGACCTATGAGAACGTGGAGCGCTGGCTGAAGGAGCTGCGGGACCACGCAGACAGCAACAT
CGTCATCATGCTGGTGGGCAACAAGAGTGACCTGCGCCACCTGCGGGCTGTGCCCACTGACGAGGCCCGC
GCCTTCGCAGAAAAGAACAACTTGTCCTTCATCGAGACCTCAGCCTTGGATTCCACTAACGTAGAGGAAG
CATTCAAGAACATCCTCACAGAGATCTACCGCATCGTGTCACAGAAACAGATCGCAGACCGCGCTGCCCA
CGACGAGTCCCCGGGGAACAACGTGGTGGACATCAGCGTGCCGCCCACCACGGACGGACAGAAGCCCAAC
AAGCTGCAGTGCTGCCAGAACCTGTGA

Translation (218 aa):
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ
ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAR
AFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPN
KLQCCQNL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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