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Report for CCDS3379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3379.1 Public Homo sapiens 4 CYTL1 24 110 108 CCDS HistoryNCBI Gene:54360Re-query CCDS DB by CCDS ID:3379.1Re-query CCDS DB by GeneID:54360See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3379.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307746.9 ENSP00000303550.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307746.9Link to Ensembl Protein Viewer:ENSP00000303550.4Re-query CCDS DB by Nucleotide ID:ENST00000307746Re-query CCDS DB by Protein ID:ENSP00000303550
Original member Current member NCBI NM_018659.3 NP_061129.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018659.3Link to Protein Sequence:NP_061129.1Re-query CCDS DB by Nucleotide ID:NM_018659Re-query CCDS DB by Protein ID:NP_061129Link to BLAST:NP_061129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061129.1 136 Q9NRR1 136 100% 0 0

Chromosomal Locations for CCDS 3379.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 5015151 5015234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5016836 5016964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5017135 5017179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5019293 5019445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGAGGACGCCTGGGCCTCTGCCCGTGCTGCTGCTGCTCCTGGCGGGAGCCCCCGCCGCGCGGCCCACTC
CCCCGACCTGCTACTCCCGCATGCGGGCCCTGAGCCAGGAGATCACCCGCGACTTCAACCTCCTGCAGGT
CTCGGAGCCCTCGGAGCCATGTGTGAGATACCTGCCCAGGCTGTACCTGGACATACACAATTACTGTGTG
CTGGACAAGCTGCGGGACTTTGTGGCCTCGCCCCCGTGTTGGAAAGTGGCCCAGGTAGATTCCTTGAAGG
ACAAAGCACGGAAGCTGTACACCATCATGAACTCGTTCTGCAGGAGAGATTTGGTATTCCTGTTGGATGA
CTGCAATGCCTTGGAATACCCAATCCCAGTGACTACGGTCCTGCCAGATCGTCAGCGCTAA

Translation (136 aa):
MRTPGPLPVLLLLLAGAPAARPTPPTCYSRMRALSQEITRDFNLLQVSEPSEPCVRYLPRLYLDIHNYCV
LDKLRDFVASPPCWKVAQVDSLKDKARKLYTIMNSFCRRDLVFLLDDCNALEYPIPVTTVLPDRQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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