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Report for CCDS12058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12058.1 Public Homo sapiens 19 ATP5F1D 24 110 108 CCDS HistoryNCBI Gene:513Re-query CCDS DB by CCDS ID:12058.1Re-query CCDS DB by GeneID:513See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12058.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215375.7 ENSP00000215375.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215375.7Link to Ensembl Protein Viewer:ENSP00000215375.1Re-query CCDS DB by Nucleotide ID:ENST00000215375Re-query CCDS DB by Protein ID:ENSP00000215375
Original member Current member EBI ENST00000395633.5 ENSP00000378995.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395633.5Link to Ensembl Protein Viewer:ENSP00000378995.1Re-query CCDS DB by Nucleotide ID:ENST00000395633Re-query CCDS DB by Protein ID:ENSP00000378995
Original member Current member EBI ENST00000591660.5 ENSP00000464863.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591660.5Link to Ensembl Protein Viewer:ENSP00000464863.1Re-query CCDS DB by Nucleotide ID:ENST00000591660Re-query CCDS DB by Protein ID:ENSP00000464863
Original member Current member NCBI NM_001001975.2 NP_001001975.1 Accepted alive Link to Nucleotide Sequence:NM_001001975.2Link to Protein Sequence:NP_001001975.1Re-query CCDS DB by Nucleotide ID:NM_001001975Re-query CCDS DB by Protein ID:NP_001001975Link to BLAST:NP_001001975.1
Original member Current member NCBI NM_001687.5 NP_001678.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001687.5Link to Protein Sequence:NP_001678.1Re-query CCDS DB by Nucleotide ID:NM_001687Re-query CCDS DB by Protein ID:NP_001678Link to BLAST:NP_001678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001975.1 168 P30049 168 100% 0 0
NP_001678.1 168 P30049 168 100% 0 0

Chromosomal Locations for CCDS 12058.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1241851 1241991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1242456 1242609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1244097 1244185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1244315 1244437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGCTGCCCGCCGCGCTGCTCCGCCGCCCGGGACTTGGCCGCCTCGTCCGCCACGCCCGTGCCTATGCCG
AGGCCGCCGCCGCCCCGGCTGCCGCCTCTGGCCCCAACCAGATGTCCTTCACCTTCGCCTCTCCCACGCA
GGTGTTCTTCAACGGTGCCAACGTCCGGCAGGTGGACGTGCCCACGCTGACCGGAGCCTTCGGCATCCTG
GCGGCCCACGTGCCCACGCTGCAGGTCCTGCGGCCGGGGCTGGTCGTGGTGCATGCAGAGGACGGCACCA
CCTCCAAATACTTTGTGAGCAGCGGTTCCATCGCAGTGAACGCCGACTCTTCGGTGCAGTTGTTGGCCGA
AGAGGCCGTGACGCTGGACATGTTGGACCTGGGGGCAGCCAAGGCAAACTTGGAGAAGGCCCAGGCGGAG
CTGGTGGGGACAGCTGACGAGGCCACGCGGGCAGAGATCCAGATCCGAATCGAGGCCAACGAGGCCCTGG
TGAAGGCCCTGGAGTAG

Translation (168 aa):
MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGIL
AAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAE
LVGTADEATRAEIQIRIEANEALVKALE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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