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Report for CCDS6613.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6613.2 Public Homo sapiens 9 DCAF10 24 110 108 CCDS HistoryNCBI Gene:79269Re-query CCDS DB by CCDS ID:6613.2Re-query CCDS DB by GeneID:79269See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6613.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377724.8 ENSP00000366953.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377724.8Link to Ensembl Protein Viewer:ENSP00000366953.3Re-query CCDS DB by Nucleotide ID:ENST00000377724Re-query CCDS DB by Protein ID:ENSP00000366953
Original member Current member NCBI NM_024345.5 NP_077321.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024345.5Link to Protein Sequence:NP_077321.3Re-query CCDS DB by Nucleotide ID:NM_024345Re-query CCDS DB by Protein ID:NP_077321Link to BLAST:NP_077321.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077321.3 559 Q5QP82-1 559 100% 0 0

Chromosomal Locations for CCDS 6613.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37800867 37801405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37819288 37819401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37842089 37842286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37854780 37854982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37857241 37857351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37860048 37860193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37861140 37861508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGTTTCCCTTTGGGCCCCATAGCCCTGGAGGGGACGGATCGGCCGGAGCCGGGGCTGAGGAGCCGACGC
CCCACGAGGGGCAGGCAGCAGCCACCGGGCCGCCCTCGCCACTACATCCCGGGGCTGATGCGACCCATCC
CCCTCCACCCGCCCGAAGCCCTCGCCGCCCCGGCGCCCCATCGCTGTCCCCGGCCCCGCGCTCCGGAGAG
CTAGGGCTGCCTGGAGCTCCGGAGTCCTCAACTGCCTCCGCCCCGGGAGAGCCGTCACCTCCCTCCCCTC
CGTGCCGGCGGCCCGGGCCAGACTGCAGGGCCAAGAGCCGGGGCCGACACGGCCTCGGCGCGGGCCTGGG
CGGCCCTGGCGCTAGGCTGTTCGGGTGGCTGAAAGAGCGCAGCCTGGGCCGCGGGCTGTTCGTGGACCCG
GCGCGGGACAATTTTCGCACCATGACTAGCCTCTACGGTTCCATCCACCCCGCGGACTCGGTGTACCTCA
GCACCCGCACCCACGGCGCCGTCTTCAACCTCGAGTACTCGCCCGACGGGTCAGTGCTGACAGTTGCTTG
TGAACAAACTGAAGTTCTGCTTTTTGACCCTATATCTTCAAAGCACATAAAAACACTTTCTGAAGCTCAT
GAAGACTGTGTAAATAATATCAGATTTCTTGATAACCGGCTGTTTGCTACCTGCTCTGATGACACTACAA
TAGCACTATGGGATCTGAGAAAATTGAACACCAAAGTATGCACTTTACATGGTCACACTAGCTGGGTGAA
GAACATCGAATATGATACTAATACAAGACTCTTAGTAACATCAGGATTTGATGGAAATGTCATTATTTGG
GACACTAACAGGTATACAGAAGATGGGTGTCCACATAAGAAATTCTTTCACACACGTTTTCTCATGCGAA
TGAGGTTAACACCAGATTGTTCCAAAATGTTGATTTCAACGTCCTCTGGATATCTCTTAATTTTGCATGA
CCTTGACTTAACTAAGTCTTTAGAAGTAGGCAGCTATCCCATTTTAAGAGCAAGAAGAACTACTTCAAGT
TCAGATTTGACCACTTCATCAAGTTCATCTGGTCCTAGAGTTTCTGGCTCACCTTGTCATCATAGTGATT
CTAATTCTTCTGAGAAACACATGTCACGAGCCTCTCAAAGAGAAGGAGTTTCACCACGAAATAGTCTTGA
AGTCGTAACCCCTGAAGTTCTTGGTGAGAGTGACCACGGAAACTGCATCACGTCCTTACAGCTGCACCCA
AAAGGCTGGGCCACTCTTCTTCGGTGCTCAAGCAACAGTGATGATGAGGAGTGTACTTGTGTCTATGAAT
TCCAAGAAGGAGCTCCAGTGCGACCTGTCTCACCTCGCTGTTCTCTACGACTGACTCATTACATTGAAGA
AGCCAATGTAGGCAGGGGTTACATCAAAGAACTTTGCTTCAGCCCCGATGGACGAATGATTTCTTCCCCA
CATGGCTATGGGATTCGCTTGTTGGGATTTGACAAACAGTGCAGTGAACTTGTTGACTGCTTGCCCAAAG
AAGCCAGTCCCCTGCGGGTGATCCGTTCTCTGTACTCTCATAATGATGTGGTACTGACAACAAAGTTCTC
TCCAACACATTGTCAGATTGCCTCAGGGTGCCTTAGTGGACGGGTTTCTTTGTATCAGCCAAAGTTTTAG

Translation (559 aa):
MFPFGPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPARSPRRPGAPSLSPAPRSGE
LGLPGAPESSTASAPGEPSPPSPPCRRPGPDCRAKSRGRHGLGAGLGGPGARLFGWLKERSLGRGLFVDP
ARDNFRTMTSLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAH
EDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIW
DTNRYTEDGCPHKKFFHTRFLMRMRLTPDCSKMLISTSSGYLLILHDLDLTKSLEVGSYPILRARRTTSS
SDLTTSSSSSGPRVSGSPCHHSDSNSSEKHMSRASQREGVSPRNSLEVVTPEVLGESDHGNCITSLQLHP
KGWATLLRCSSNSDDEECTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSP
HGYGIRLLGFDKQCSELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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