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Report for CCDS1052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1052.1 Public Homo sapiens 1 INTS3 24 110 108 CCDS HistoryNCBI Gene:65123Re-query CCDS DB by CCDS ID:1052.1Re-query CCDS DB by GeneID:65123See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318967.7 ENSP00000318641.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318967.7Link to Ensembl Protein Viewer:ENSP00000318641.2Re-query CCDS DB by Nucleotide ID:ENST00000318967Re-query CCDS DB by Protein ID:ENSP00000318641
Original member Current member EBI ENST00000435409.6 ENSP00000404290.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435409.6Link to Ensembl Protein Viewer:ENSP00000404290.2Re-query CCDS DB by Nucleotide ID:ENST00000435409Re-query CCDS DB by Protein ID:ENSP00000404290
Original member Current member NCBI NM_001324475.2 NP_001311404.1 Accepted alive Link to Nucleotide Sequence:NM_001324475.2Link to Protein Sequence:NP_001311404.1Re-query CCDS DB by Nucleotide ID:NM_001324475Re-query CCDS DB by Protein ID:NP_001311404Link to BLAST:NP_001311404.1
Original member Current member NCBI NM_023015.5 NP_075391.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023015.5Link to Protein Sequence:NP_075391.3Re-query CCDS DB by Nucleotide ID:NM_023015Re-query CCDS DB by Protein ID:NP_075391Link to BLAST:NP_075391.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311404.1 1042 Q68E01-2 1042 100% 0 0
NP_075391.3 1042 Q68E01-2 1042 100% 0 0

Chromosomal Locations for CCDS 1052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153728635 153728784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153740651 153740734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153741285 153741368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153746957 153747070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153747279 153747363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153748689 153748755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153751095 153751239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153752279 153752408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153754642 153754739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153757572 153757763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153759526 153759613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153760311 153760390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153760827 153760918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153761570 153761676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153762728 153762847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153763233 153763362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153763832 153763886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153764118 153764221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153764690 153764734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153764944 153765063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153767674 153767827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153768893 153768961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153769769 153769844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153770198 153770311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153770685 153770733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153771796 153771963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153772340 153772440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153772639 153772711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153772925 153773081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153773193 153773270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGGAGTTGCAGAAGGGAAAAGGGGCGGCAGCAGCAGCAGCTGCTTCGGGAGCAGCGGGAGGTGGAGGAG
GAGGAGCGGGAGCAGGAGCCCCAGGAGGGGGGAGGCTGCTACTTTCAACCAGTTTGGATGCCAAGGATGA
GTTAGAGGAGAGATTGGAAAGGTGTATGAGCATTGTGACATCGATGACTGCTGGTGTCTCGGAGAGAGAA
GCCAATGATGCCCTCAATGCGTATGTGTGCAAAGGCCTCCCCCAGCATGAAGAAATCTGCCTGGGCCTGT
TTACTCTCATCCTCACTGAACCTGCCCAAGCCCAGAAGTGTTACCGGGACTTAGCTCTGGTGAGTCGTGA
TGGCATGAATATTGTCCTGAATAAAATCAACCAGATACTTATGGAGAAGTACCTGAAGCTGCAGGATACC
TGCCGTACTCAGTTGGTGTGGTTGGTACGGGAACTGGTGAAGAGTGGGGTTCTGGGAGCCGATGGTGTTT
GTATGACGTTTATGAAGCAGATTGCAGGTGGAGATGTTACAGCCAAAAATATCTGGTTGGCAGAAAGTGT
TCTGGATATCCTGACAGAGCAAAGGGAGTGGGTCCTGAAGAGCAGCATCCTCATTGCCATGGCTGTTTAC
ACGTACCTCCGCCTCATCGTGGACCACCATGGGACTGCCCAGCTCCAGGCCCTGCGACAGAAGGAAGTAG
ACTTCTGCATCTCACTGCTTCGGGAACGGTTCATGGAATGTCTGATGATTGGTCGGGATCTCGTAAGACT
ACTTCAGAATGTTGCTAGGATACCAGAATTTGAACTGCTTTGGAAAGATATTATCCATAATCCTCAGGCC
TTGAGTCCTCAGTTCACAGGTATCCTACAGCTTCTTCAGTCAAGAACATCCCGAAAATTCCTAGCATGTC
GTCTAACCCCGGACATGGAGACTAAACTCCTCTTCATGACATCCCGGGTGCGATTTGGTCAACAAAAGCG
ATACCAAGATTGGTTCCAGCGCCAGTACCTGTCAACTCCAGATAGTCAGTCTCTGCGCTGTGACCTCATT
CGCTACATCTGTGGGGTAGTCCACCCTTCTAATGAAGTACTGAGTTCAGATATCTTGCCCCGGTGGGCCA
TCATTGGTTGGCTCCTGACAACGTGCACGTCAAATGTCGCTGCCTCCAATGCCAAGCTGGCTTTGTTTTA
TGACTGGCTGTTCTTTAGTCCAGACAAGGATAGCATTATGAACATAGAACCAGCCATCCTGGTCATGCAC
CACTCCATGAAGCCCCACCCAGCCATCACTGCCACACTCCTGGACTTCATGTGCCGCATCATTCCCAACT
TCTATCCACCATTGGAGGGCCACGTGCGGCAGGGTGTCTTTTCCTCCCTCAACCACATTGTGGAGAAACG
GGTCTTGGCACACCTAGCTCCCCTGTTTGACAACCCTAAGTTGGATAAGGAGCTGCGGGCAATGCTGAGA
GAGAAGTTTCCTGAGTTCTGCAGCTCACCCTCCCCACCTGTGGAAGTCAAAATTGAGGAGCCAGTTTCCA
TGGAGATGGACAACCATATGTCGGATAAGGATGAGAGTTGCTATGACAATGCAGAGGCAGCCTTCAGTGA
CGATGAAGAGGATCTCAACAGCAAAGGAAAGAAGAGGGAGTTTCGCTTCCACCCTATCAAGGAGACAGTT
GTGGAGGAGCCAGTTGATATCACCCCTTACCTTGACCAGTTGGATGAGTCCCTGAGGGACAAAGTACTCC
AGCTACAGAAGGGGAGTGATACGGAGGCCCAGTGTGAGGTCATGCAGGAAATTGTGGACCAGGTCCTGGA
GGAAGACTTTGACTCGGAGCAGCTGTCTGTCCTTGCTTCCTGCCTACAGGAGCTCTTCAAGGCCCACTTT
CGAGGGGAGGTCCTGCCTGAGGAGATTACTGAGGAGTCCCTGGAGGAGTCTGTAGGAAAGCCTCTGTACC
TAATATTTAGGAACCTATGTCAGATGCAGGAAGACAACAGCAGCTTCTCTCTACTTCTAGACCTTCTCTC
CGAGCTATATCAGAAGCAGCCCAAGATTGGCTACCACCTGCTCTACTACCTGAGGGCCAGCAAAGCCGCC
GCAGGGAAGATGAACCTGTACGAGTCATTTGCCCAGGCTACCCAGCTGGGCGATCTGCACACCTGCCTGA
TGATGGACATGAAGGCCTGCCAGGAGGACGATGTGCGGCTCCTGTGCCACCTCACGCCCTCCATCTACAC
AGAGTTTCCAGATGAAACCTTGAGGAGCGGAGAGCTGCTGAACATGATCGTGGCTGTTATTGACTCTGCA
CAGCTCCAGGAGCTGGTCTGCCACGTGATGATGGGTAACCTGGTTATGTTTCGAAAAGACTCAGTTCTCA
ACATACTCATTCAGAGCCTAGACTGGGAGACCTTTGAGCAGTATTGTGCCTGGCAGCTCTTTCTGGCCCA
CAATATTCCCCTGGAGACCATAATCCCCATCCTGCAGCACCTCAAATACAAGGAGCACCCAGAGGCCCTG
TCCTGCCTACTGCTTCAACTCCGAAGAGAAAAGCCCAGCGAGGAGATGGTGAAGATGGTGCTGAGCCGGC
CCTGCCATCCTGACGACCAGTTCACCACCAGCATCCTGCGGCACTGGTGCATGAAACATGACGAGCTGCT
GGCCGAGCACATCAAGTCCCTGCTCATCAAGAACAACAGCCTGCCTCGCAAGAGACAGAGCCTGAGGAGC
TCTAGCAGCAAGCTGGCCCAGCTGACTCTGGAGCAGATCCTGGAGCACTTGGACAATCTGCGGCTCAACC
TGACCAACACCAAGCAGAACTTTTTTAGCCAGACGCCAATTCTCCAGGCGCTGCAGCATGTCCAAGCGAG
CTGTGACGAAGCCCACAAGATGAAATTCAGTGATCTCTTCTCCCTGGCGGAGGAATATGAGGACTCTTCC
ACCAAGCCACCCAAGAGCCGGCGAAAAGCAGCTCTGTCCAGCCCTCGAAGTCGAAAGAATGCCACACAGC
CCCCCAATGCCGAAGAAGAGTCGGGCTCCAGCAGTGCTTCAGAAGAGGAAGACACGAAACCGAAGCCTAC
CAAGCGGAAACGAAAAGGGTCCTCTGCAGTGGGCTCTGACAGTGACTGA

Translation (1042 aa):
MELQKGKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTAGVSERE
ANDALNAYVCKGLPQHEEICLGLFTLILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDT
CRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVY
TYLRLIVDHHGTAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQA
LSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLI
RYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMH
HSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLR
EKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETV
VEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHF
RGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAA
AGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSA
QLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEAL
SCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRS
SSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSS
TKPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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