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Report for CCDS6786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6786.1 Public Homo sapiens 9 SLC46A2 24 110 108 CCDS HistoryNCBI Gene:57864Re-query CCDS DB by CCDS ID:6786.1Re-query CCDS DB by GeneID:57864See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6786.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374228.5 ENSP00000363345.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374228.5Link to Ensembl Protein Viewer:ENSP00000363345.4Re-query CCDS DB by Nucleotide ID:ENST00000374228Re-query CCDS DB by Protein ID:ENSP00000363345
Original member Current member NCBI NM_033051.4 NP_149040.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033051.4Link to Protein Sequence:NP_149040.3Re-query CCDS DB by Nucleotide ID:NM_033051Re-query CCDS DB by Protein ID:NP_149040Link to BLAST:NP_149040.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149040.3 475 Q9BY10 475 100% 0 0

Chromosomal Locations for CCDS 6786.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112879762 112879819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112886460 112886616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112887330 112887413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112889553 112890681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGAGCCCCGAGGTCACCTGCCCGCGGAGGGGCCACCTGCCTCGCTTCCACCCGAGGACCTGGGTTGAGC
CCGTGGTGGCCTCGTCCCAGGTGGCTGCCTCCCTCTACGATGCGGGGCTACTCCTCGTGGTGAAGGCGTC
CTACGGAACCGGAGGCTCCTCCAACCACAGTGCCAGCCCATCGCCCCGGGGGGCTCTAGAGGACCAACAG
CAGAGAGCCATCTCCAATTTCTACATTATCTACAACCTTGTGGTGGGCCTGTCCCCCCTGCTGTCCGCCT
ACGGGCTGGGATGGCTCAGCGACCGCTACCACCGAAAGATCTCCATCTGCATGTCGCTGCTGGGCTTCCT
GCTCTCCCGCCTCGGGCTGCTGCTCAAGGTGCTGCTGGACTGGCCAGTGGAGGTGCTGTACGGGGCGGCG
GCGCTGAACGGGCTATTCGGCGGCTTCTCCGCCTTCTGGTCCGGGGTCATGGCGCTGGGATCGCTGGGCT
CCTCCGAGGGCCGCCGCTCTGTGCGCCTCATCCTCATTGACCTGATGCTGGGCTTGGCGGGGTTCTGCGG
GAGCATGGCTTCCGGGCATCTCTTCAAGCAGATGGCTGGGCACTCTGGGCAGGGCCTGATACTGACGGCC
TGCAGCGTGAGCTGTGCCTCGTTTGCCCTGCTCTACAGCCTTTTGGTGCTAAAGGTCCCTGAGTCGGTGG
CCAAACCCAGCCAGGAGCTCCCCGCCGTGGATACCGTGTCTGGCACGGTTGGCACATACCGCACTCTGGA
TCCTGATCAGTTGGACCAACAGTATGCAGTGGGGCACCCTCCATCTCCTGGAAAAGCAAAACCCCATAAA
ACCACCATTGCCTTGCTCTTTGTGGGTGCTATCATATATGACCTGGCGGTGGTGGGCACAGTGGACGTGA
TCCCTCTTTTTGTGCTGAGGGAGCCTCTCGGTTGGAACCAAGTGCAGGTGGGCTATGGTATGGCTGCAGG
GTACACCATCTTCATCACCAGCTTCCTGGGTGTCCTGGTCTTCTCCCGCTGCTTTCGGGACACCACCATG
ATCATGATTGGGATGGTCTCCTTTGGGTCAGGAGCCCTCCTCTTGGCTTTTGTGAAAGAGACATACATGT
TCTATATTGCTCGAGCCGTCATGCTGTTTGCTCTCATCCCCGTCACAACCATCCGATCAGCTATGTCCAA
ACTCATAAAGGGCTCCTCTTATGGAAAGGTGTTCGTCATACTGCAGCTGTCCTTGGCTCTGACCGGCGTG
GTGACATCCACCTTGTACAACAAGATCTACCAGCTCACCATGGACATGTTTGTGGGCTCCTGCTTTGCTC
TCTCCTCCTTTCTCTCCTTCCTGGCCATCATTCCAATTAGCATCGTGGCCTATAAACAAGTCCCATTGTC
ACCATATGGAGACATCATAGAGAAATGA

Translation (475 aa):
MSPEVTCPRRGHLPRFHPRTWVEPVVASSQVAASLYDAGLLLVVKASYGTGGSSNHSASPSPRGALEDQQ
QRAISNFYIIYNLVVGLSPLLSAYGLGWLSDRYHRKISICMSLLGFLLSRLGLLLKVLLDWPVEVLYGAA
ALNGLFGGFSAFWSGVMALGSLGSSEGRRSVRLILIDLMLGLAGFCGSMASGHLFKQMAGHSGQGLILTA
CSVSCASFALLYSLLVLKVPESVAKPSQELPAVDTVSGTVGTYRTLDPDQLDQQYAVGHPPSPGKAKPHK
TTIALLFVGAIIYDLAVVGTVDVIPLFVLREPLGWNQVQVGYGMAAGYTIFITSFLGVLVFSRCFRDTTM
IMIGMVSFGSGALLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTGV
VTSTLYNKIYQLTMDMFVGSCFALSSFLSFLAIIPISIVAYKQVPLSPYGDIIEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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