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Report for CCDS8974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8974.1 Public Homo sapiens 12 LLPH 24 110 108 CCDS HistoryNCBI Gene:84298Re-query CCDS DB by CCDS ID:8974.1Re-query CCDS DB by GeneID:84298See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8974.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266604.7 ENSP00000266604.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266604.7Link to Ensembl Protein Viewer:ENSP00000266604.2Re-query CCDS DB by Nucleotide ID:ENST00000266604Re-query CCDS DB by Protein ID:ENSP00000266604
Original member Current member EBI ENST00000446587.2 ENSP00000437372.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446587.2Link to Ensembl Protein Viewer:ENSP00000437372.1Re-query CCDS DB by Nucleotide ID:ENST00000446587Re-query CCDS DB by Protein ID:ENSP00000437372
Original member Current member NCBI NM_032338.4 NP_115714.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032338.4Link to Protein Sequence:NP_115714.1Re-query CCDS DB by Nucleotide ID:NM_032338Re-query CCDS DB by Protein ID:NP_115714Link to BLAST:NP_115714.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115714.1 129 Q9BRT6 129 100% 0 0

Chromosomal Locations for CCDS 8974.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 66123840 66124018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66128896 66129106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGGCTAAAAGCTTACGGAGTAAGTGGAAAAGAAAGATGCGTGCTGAAAAGAGAAAAAAGAATGCCCCAA
AGGAGGCCAGCAGGCTTAAAAGTATTCTCAAACTAGACGGTGATGTTTTAATGAAAGATGTTCAAGAGAT
AGCAACTGTGGTGGTACCCAAACCCAAACATTGCCAAGAGAAAATGCAATGTGAGGTAAAAGATGAAAAA
GATGACATGAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGGACAGTACC
CAATATGGATGAACCAAAGGCAAAGAAAAAGGCTGAAGGCAAAGCGAGAGAAAAGAAAGGGGAAAAGCAA
AGCAAAAGCAGTGAAAGTGGCAAAGGGTTTGGCCTGGTAG

Translation (129 aa):
MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEK
DDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAVKVAKGLAW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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