NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6009.1 Public Homo sapiens 8 SH2D4A 24 110 108 CCDS HistoryNCBI Gene:63898Re-query CCDS DB by CCDS ID:6009.1Re-query CCDS DB by GeneID:63898See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6009.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265807.8 ENSP00000265807.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265807.8Link to Ensembl Protein Viewer:ENSP00000265807.3Re-query CCDS DB by Nucleotide ID:ENST00000265807Re-query CCDS DB by Protein ID:ENSP00000265807
Original member Current member EBI ENST00000519207.5 ENSP00000428684.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519207.5Link to Ensembl Protein Viewer:ENSP00000428684.1Re-query CCDS DB by Nucleotide ID:ENST00000519207Re-query CCDS DB by Protein ID:ENSP00000428684
Original member Current member NCBI NM_001174159.2 NP_001167630.1 Accepted alive Link to Nucleotide Sequence:NM_001174159.2Link to Protein Sequence:NP_001167630.1Re-query CCDS DB by Nucleotide ID:NM_001174159Re-query CCDS DB by Protein ID:NP_001167630Link to BLAST:NP_001167630.1
Original member Current member NCBI NM_022071.4 NP_071354.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022071.4Link to Protein Sequence:NP_071354.2Re-query CCDS DB by Nucleotide ID:NM_022071Re-query CCDS DB by Protein ID:NP_071354Link to BLAST:NP_071354.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167630.1 454 Q9H788-1 454 100% 0 0
NP_071354.2 454 Q9H788-1 454 100% 0 0

Chromosomal Locations for CCDS 6009.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 19319548 19319728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19332955 19333114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19334686 19334857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19357203 19357283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19361203 19361314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19364072 19364282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19373530 19373660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19393318 19393541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19394550 19394642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGCTGAAACAGATACTGTCGGAGATGTACATAGATCCTGATCTACTGGCAGAGCTCAGCGAAGAACAGA
AACAGATCCTGTTCTTCAAGATGAGAGAGGAACAGATCCGACGATGGAAAGAAAGAGAAGCAGCTATGGA
AAGAAAGGAGTCCCTGCCAGTGAAACCCAGACCAAAGAAAGAGAATGGCAAATCGGTTCATTGGAAACTT
GGAGCTGATAAGGAAGTCTGGGTATGGGTGATGGGCGAACACCATCTAGATAAACCCTATGATGTGCTCT
GTAATGAAATTATTGCTGAGAGGGCCCGGCTGAAAGCAGAACAGGAGGCAGAAGAGCCCAGAAAAACTCA
CTCTGAAGAATTCACCAATAGCTTGAAAACAAAATCACAGTACCATGATCTGCAGGCTCCGGATAACCAG
CAGACTAAAGACATCTGGAAGAAAGTGGCAGAAAAGGAGGAACTGGAGCAAGGATCGAGGCCAGCACCAA
CCCTGGAAGAAGAGAAAATCCGATCACTCTCCAGTTCTTCAAGAAATATTCAACAAATGTTGGCAGATTC
AATCAATCGTATGAAGGCATATGCATTTCACCAGAAGAAAGAATCTATGAAGAAAAAACAAGATGAAGAA
ATAAATCAAATAGAAGAAGAGAGAACGAAGCAGATTTGTAAGAGCTGGAAAGAAGACTCGGAATGGCAGG
CATCTCTGCGAAAATCCAAAGCAGCTGATGAGAAGAGACGCTCCTTGGCTAAACAAGCACGAGAAGACTA
CAAGAGGTTATCCCTCGGGGCCCAGAAAGGAAGAGGCGGTGAGAGGCTGCAAAGCCCCTTGCGTGTTCCG
CAGAAACCAGAAAGACCTCCCCTTCCACCCAAGCCTCAGTTCCTAAACTCAGGGGCATATCCTCAAAAAC
CTCTTAGAAATCAGGGAGTGGTGAGGACACTGTCCAGCTCTGCCCAAGAGGACATCATCCGGTGGTTTAA
AGAGGAGCAGCTACCACTTCGAGCGGGCTACCAGAAAACCTCAGACACCATAGCCCCCTGGTTCCATGGA
ATTCTCACACTCAAGAAAGCAAATGAACTTCTTCTGAGCACAGGCATGCCCGGCAGTTTTCTCATCCGAG
TCAGTGAAAGGATCAAAGGCTATGCCCTGTCCTATCTGTCGGAGGACGGCTGTAAACATTTCCTCATCGA
TGCCTCTGCAGACGCCTACAGCTTCCTGGGCGTGGACCAGCTACAGCATGCCACCTTGGCGGATTTGGTG
GAATATCACAAGGAGGAACCCATCACTTCCCTGGGGAAGGAGCTCCTTCTCTATCCCTGTGGTCAGCAGG
ACCAGCTGCCTGACTACCTGGAGCTGTTTGAGTGA

Translation (454 aa):
MLKQILSEMYIDPDLLAELSEEQKQILFFKMREEQIRRWKEREAAMERKESLPVKPRPKKENGKSVHWKL
GADKEVWVWVMGEHHLDKPYDVLCNEIIAERARLKAEQEAEEPRKTHSEEFTNSLKTKSQYHDLQAPDNQ
QTKDIWKKVAEKEELEQGSRPAPTLEEEKIRSLSSSSRNIQQMLADSINRMKAYAFHQKKESMKKKQDEE
INQIEEERTKQICKSWKEDSEWQASLRKSKAADEKRRSLAKQAREDYKRLSLGAQKGRGGERLQSPLRVP
QKPERPPLPPKPQFLNSGAYPQKPLRNQGVVRTLSSSAQEDIIRWFKEEQLPLRAGYQKTSDTIAPWFHG
ILTLKKANELLLSTGMPGSFLIRVSERIKGYALSYLSEDGCKHFLIDASADAYSFLGVDQLQHATLADLV
EYHKEEPITSLGKELLLYPCGQQDQLPDYLELFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH