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Report for CCDS43025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43025.1 Public Homo sapiens 22 SHISAL1 24 110 108 CCDS HistoryNCBI Gene:85352Re-query CCDS DB by CCDS ID:43025.1Re-query CCDS DB by GeneID:85352See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43025.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381176.5 ENSP00000370568.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381176.5Link to Ensembl Protein Viewer:ENSP00000370568.4Re-query CCDS DB by Nucleotide ID:ENST00000381176Re-query CCDS DB by Protein ID:ENSP00000370568
Original member Current member NCBI NM_001099294.2 NP_001092764.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099294.2Link to Protein Sequence:NP_001092764.1Re-query CCDS DB by Nucleotide ID:NM_001099294Re-query CCDS DB by Protein ID:NP_001092764Link to BLAST:NP_001092764.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092764.1 199 Q3SXP7 199 100% 0 0

Chromosomal Locations for CCDS 43025.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 44249685 44249685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44285428 44285745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44296672 44296885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44300879 44300945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGACCAGTTGTGGCCAGCAGTCCTTGAACGTGCTCGCCGTCCTCTTCTCATTGCTGTTTTCTGCAGTCT
TGTCTGCACATTTCCGGGTCTGTGAACCATACACAGACCACAAAGGCCGCTACCACTTTGGCTTCCACTG
CCCCCGGCTCTCGGACAACAAGACCTTCATCCTCTGTTGTCACCATAACAACACGGTCTTCAAATACTGC
TGCAACGAGACGGAGTTCCAGGCGGTGATGCAGGCGAACCTCACGGCCAGCTCCGAGGGTTACATGCACA
ACAATTACACCGCCTTGTTGGGAGTGTGGATCTATGGATTTTTCGTGTTGATGCTGCTGGTTCTGGACCT
TTTGTATTACTCGGCAATGAACTACGACATCTGCAAGGTCTACCTGGCACGGTGGGGCATCCAAGGACGA
TGGATGAAACAGGACCCCCGGCGGTGGGGGAACCCCGCTCGGGCCCCTCGGCCGGGTCAGCGGGCCCCAC
AGCCGCAGCCTCCCCCAGGCCCGCTGCCACAAGCCCCACAGGCCGTGCACACATTGCGGGGAGATGCTCA
CAGCCCACCGCTGATGACCTTCCAGAGTTCGTCTGCCTGA

Translation (199 aa):
MTSCGQQSLNVLAVLFSLLFSAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYC
CNETEFQAVMQANLTASSEGYMHNNYTALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGR
WMKQDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMTFQSSSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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