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Report for CCDS8817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8817.1 Public Homo sapiens 12 TAMALIN 24 110 108 CCDS HistoryNCBI Gene:160622Re-query CCDS DB by CCDS ID:8817.1Re-query CCDS DB by GeneID:160622See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8817.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293662.9 ENSP00000293662.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293662.9Link to Ensembl Protein Viewer:ENSP00000293662.4Re-query CCDS DB by Nucleotide ID:ENST00000293662Re-query CCDS DB by Protein ID:ENSP00000293662
Original member Current member NCBI NM_181711.4 NP_859062.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181711.4Link to Protein Sequence:NP_859062.1Re-query CCDS DB by Nucleotide ID:NM_181711Re-query CCDS DB by Protein ID:NP_859062Link to BLAST:NP_859062.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859062.1 395 Q7Z6J2-1 395 100% 0 0

Chromosomal Locations for CCDS 8817.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52007020 52007265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52009190 52009239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52010881 52010935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52011039 52011141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52013687 52013780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52013877 52013943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52014135 52014201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52014694 52015199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGACCCTCCGCCGACTCAGGAAGCTGCAGCAGAAGGAGGAGGCGGCGGCCACCCCGGACCCCGCCGCCC
GGACTCCCGACTCGGAAGTCGCGCCCGCCGCTCCGGTCCCGACCCCGGGACCCCCTGCCGCAGCCGCCAC
CCCTGGGCCCCCAGCGGACGAGCTGTACGCGGCGCTGGAGGACTATCACCCTGCCGAGCTGTACCGCGCG
CTCGCCGTGTCCGGGGGCACCCTGCCCCGCCGAAAGGGCTCAGGATTCCGCTGGAAGAATCTCAGCCAGA
GTCCTGAACAGCAGCGGAAAGTGCTGACGTTGGAGAAGGAGGATAACCAGACCTTCGGCTTTGAGATCCA
GACTTATGGCCTTCACCACCGGGAGGAGCAGCGTGTGGAAATGGTGACCTTTGTCTGCCGAGTTCATGAG
TCTAGCCCTGCCCAGCTGGCTGGGCTCACACCAGGGGACACCATCGCCAGCGTCAATGGCCTGAATGTGG
AAGGCATCCGGCATCGAGAGATTGTGGACATCATTAAGGCGTCAGGCAATGTTCTCAGACTGGAAACTCT
ATATGGGACATCAATTCGGAAGGCAGAACTGGAGGCTCGTCTGCAGTACCTGAAGCAAACCCTGTATGAG
AAGTGGGGAGAGTACAGGTCCCTAATGGTGCAGGAGCAGCGGCTGGTGCATGGCCTGGTGGTGAAGGACC
CCAGCATCTACGACACGCTGGAGTCGGTGCGCTCCTGCCTCTACGGCGCGGGCCTGCTCCCGGGCTCGCT
GCCCTTCGGGCCTCTGCTCGCCGTGCCCGGGCGTCCCCGCGGAGGCGCCCGACGGGCCAGGGGCGACGCC
GACGACGCCGTCTACCACACGTGCTTCTTCGGGGACTCCGAGCCGCCGGCGCTGCCGCCCCCGCCGCCCC
CGGCCCGCGCCTTCGGCCCGGGCCCCGCCGAGACCCCTGCCGTGGGGCCGGGCCCTGGGCCGCGGGCCGC
GCTGAGCCGCAGCGCCAGTGTGCGGTGCGCGGGCCCTGGCGGGGGCGGAGGCGGGGGCGCGCCGGGCGCG
CTCTGGACTGAGGCTCGCGAGCAGGCCCTATGCGGCCCCGGCCTGCGCAAAACCAAGTACCGCAGCTTCC
GCCGGCGGCTGCTCAAGTTCATCCCCGGACTCAACCGCTCCCTGGAGGAGGAGGAGAGCCAGCTGTAG

Translation (395 aa):
MTLRRLRKLQQKEEAAATPDPAARTPDSEVAPAAPVPTPGPPAAAATPGPPADELYAALEDYHPAELYRA
LAVSGGTLPRRKGSGFRWKNLSQSPEQQRKVLTLEKEDNQTFGFEIQTYGLHHREEQRVEMVTFVCRVHE
SSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYGTSIRKAELEARLQYLKQTLYE
KWGEYRSLMVQEQRLVHGLVVKDPSIYDTLESVRSCLYGAGLLPGSLPFGPLLAVPGRPRGGARRARGDA
DDAVYHTCFFGDSEPPALPPPPPPARAFGPGPAETPAVGPGPGPRAALSRSASVRCAGPGGGGGGGAPGA
LWTEAREQALCGPGLRKTKYRSFRRRLLKFIPGLNRSLEEEESQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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