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Report for CCDS1475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1475.1 Public Homo sapiens 1 C1orf116 24 110 108 CCDS HistoryNCBI Gene:79098Re-query CCDS DB by CCDS ID:1475.1Re-query CCDS DB by GeneID:79098See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359470.6 ENSP00000352447.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359470.6Link to Ensembl Protein Viewer:ENSP00000352447.5Re-query CCDS DB by Nucleotide ID:ENST00000359470Re-query CCDS DB by Protein ID:ENSP00000352447
Original member Current member NCBI NM_023938.6 NP_076427.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023938.6Link to Protein Sequence:NP_076427.2Re-query CCDS DB by Nucleotide ID:NM_023938Re-query CCDS DB by Protein ID:NP_076427Link to BLAST:NP_076427.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076427.2 601 Q9BW04-1 601 100% 0 0

Chromosomal Locations for CCDS 1475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 207021958 207023480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207024887 207025064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207027494 207027598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGCCCGAGAGGGAGCTGTGGCCAGCGGGGACTGGCTCAGAACCCGTGACCCGTGTCGGCAGCTGTGACA
GCATGATGAGCAGCACCTCCACCCGCTCTGGATCTAGTGATAGCAGCTACGACTTCCTGTCCACTGAAGA
GAAGGAGTGTCTGCTCTTCCTGGAGGAGACCATTGGCTCACTGGACACGGAGGCTGACAGCGGACTGTCC
ACTGACGAGTCTGAGCCAGCCACAACTCCCAGAGGTTTCCGAGCACTGCCCATAACCCAACCCACTCCCC
GGGGAGGTCCAGAGGAGACCATCACTCAGCAAGGACGAACGCCAAGGACAGTAACTGAGTCCAGCTCATC
CCACCCTCCTGAGCCCCAGGGCCTAGGCCTCAGGTCTGGCTCCTACAGCCTCCCTAGGAATATCCACATT
GCCAGAAGCCAGAACTTCAGGAAAAGCACCACCCAGGCTAGCAGTCACAACCCTGGAGAACCGGGGAGGC
TTGCGCCAGAGCCTGAGAAAGAACAGGTCAGCCAGAGCAGCCAACCCAGGCAGGCACCTGCCAGCCCCCA
GGAGGCTGCCCTTGACTTGGACGTGGTGCTCATCCCTCCGCCAGAAGCTTTCCGGGACACCCAGCCAGAG
CAGTGTAGGGAAGCCAGCCTGCCCGAGGGGCCAGGACAGCAGGGCCACACACCCCAGCTCCACACACCAT
CCAGCTCCCAGGAAAGAGAGCAGACTCCTTCAGAAGCCATGTCCCAAAAAGCCAAGGAAACAGTCTCAAC
CAGGTACACACAACCCCAGCCTCCTCCTGCAGGGTTGCCTCAGAATGCAAGAGCTGAAGATGCTCCCCTC
TCATCAGGGGAGGACCCAAACAGCCGACTAGCTCCCCTCACAACCCCTAAGCCCCGGAAGCTGCCACCTA
ATATTGTTCTGAAGAGCAGCCGAAGCAGTTTCCACAGTGACCCCCAGCACTGGCTGTCCCGCCACACTGA
GGCTGCCCCTGGAGATTCTGGCCTGATCTCCTGTTCACTGCAAGAGCAGAGAAAAGCACGTAAAGAAGCT
CTAGAGAAGCTGGGGCTACCCCAGGATCAAGATGAGCCTGGACTCCACTTAAGTAAGCCCACCAGCTCCA
TCAGACCCAAGGAGACACGGGCCCAGCATCTGTCCCCAGCTCCAGGTCTGGCTCAGCCTGCAGCTCCAGC
CCAGGCCTCAGCAGCTATTCCTGCTGCTGGGAAGGCTCTGGCTCAAGCTCCGGCTCCAGCTCCAGGTCCA
GCTCAGGGACCTTTGCCAATGAAGTCTCCAGCTCCAGGCAATGTTGCAGCTAGCAAATCTATGCCAATTT
CTATCCCTAAGGCCCCAAGGGCAAACAGTGCCCTGACTCCACCGAAGCCAGAGTCAGGGCTGACTCTCCA
GGAGAGCAACACCCCTGGCCTGAGACAGATGAACTTCAAGTCCAACACTCTGGAGCGCTCAGGCGTGGGA
CTGAGCAGCTACCTTTCAACTGAGAAAGATGCCAGCCCCAAAACCAGCACTTCTCTGGGAAAGGGCTCCT
TCTTGGACAAGATCTCGCCCAGTGTCTTACGTAATTCTCGGCCCCGCCCGGCCTCCCTGGGCACGGGGAA
AGATTTTGCAGGTATCCAGGTAGGCAAGCTGGCTGACCTGGAGCAGGAGCAGAGCTCCAAGCGCCTGTCC
TACCAAGGACAGAGCCGTGACAAGCTTCCTCGCCCCCCCTGTGTCAGTGTCAAGATCTCCCCAAAGGGTG
TCCCCAATGAACACAGAAGGGAGGCCCTGAAGAAGCTGGGACTGTTGAAGGAGTAG

Translation (601 aa):
MPERELWPAGTGSEPVTRVGSCDSMMSSTSTRSGSSDSSYDFLSTEEKECLLFLEETIGSLDTEADSGLS
TDESEPATTPRGFRALPITQPTPRGGPEETITQQGRTPRTVTESSSSHPPEPQGLGLRSGSYSLPRNIHI
ARSQNFRKSTTQASSHNPGEPGRLAPEPEKEQVSQSSQPRQAPASPQEAALDLDVVLIPPPEAFRDTQPE
QCREASLPEGPGQQGHTPQLHTPSSSQEREQTPSEAMSQKAKETVSTRYTQPQPPPAGLPQNARAEDAPL
SSGEDPNSRLAPLTTPKPRKLPPNIVLKSSRSSFHSDPQHWLSRHTEAAPGDSGLISCSLQEQRKARKEA
LEKLGLPQDQDEPGLHLSKPTSSIRPKETRAQHLSPAPGLAQPAAPAQASAAIPAAGKALAQAPAPAPGP
AQGPLPMKSPAPGNVAASKSMPISIPKAPRANSALTPPKPESGLTLQESNTPGLRQMNFKSNTLERSGVG
LSSYLSTEKDASPKTSTSLGKGSFLDKISPSVLRNSRPRPASLGTGKDFAGIQVGKLADLEQEQSSKRLS
YQGQSRDKLPRPPCVSVKISPKGVPNEHRREALKKLGLLKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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