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Report for CCDS13675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13675.1 Public Homo sapiens 21 RIPK4 24 110 108 CCDS HistoryNCBI Gene:54101Re-query CCDS DB by CCDS ID:13675.1Re-query CCDS DB by GeneID:54101See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13675.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332512.8 ENSP00000332454.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332512.8Link to Ensembl Protein Viewer:ENSP00000332454.3Re-query CCDS DB by Nucleotide ID:ENST00000332512Re-query CCDS DB by Protein ID:ENSP00000332454
Original member Current member NCBI NM_020639.3 NP_065690.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020639.3Link to Protein Sequence:NP_065690.2Re-query CCDS DB by Nucleotide ID:NM_020639Re-query CCDS DB by Protein ID:NP_065690Link to BLAST:NP_065690.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065690.2 784 P57078-2 784 100% 0 0

Chromosomal Locations for CCDS 13675.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 41740838 41741997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41743882 41744140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41745759 41745862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41746613 41746771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41749154 41749203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41751097 41751245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41756525 41756816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41766860 41767041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGGAGGGCGACGGCGGGACCCCATGGGCCCTGGCGCTGCTGCGCACCTTCGACGCGGGCGAGTTCACGG
GC
TGGGAGAAGGTGGGCTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTCCACTGGAAGACCTG
G
CTGGCCATCAAGTGCTCGCCCAGCCTGCACGTCGACGACAGGGAGCGCATGGAGCTTTTGGAAGAAGCC
AAG
AAGATGGAGATGGCCAAGTTTCGCTACATCCTGCCTGTGTATGGCATCTGCCGCGAACCTGTCGGCC
TG
GTCATGGAGTACATGGAGACGGGCTCCCTGGAAAAGCTGCTGGCTTCGGAGCCATTGCCATGGGATCT
C
CGGTTCCGAATCATCCACGAGACGGCGGTGGGCATGAACTTCCTGCACTGCATGGCCCCGCCACTCCTG
CAC
CTGGACCTCAAGCCCGCGAACATCCTGCTGGATGCCCACTACCACGTCAAGATTTCTGATTTTGGTC
TG
GCCAAGTGCAACGGGCTGTCCCACTCGCATGACCTCAGCATGGATGGCCTGTTTGGCACAATCGCCTA
C
CTCCCTCCAGAGCGCATCAGGGAGAAGAGCCGGCTCTTCGACACCAAGCACGATGTATACAGCTTTGCG
ATC
GTCATCTGGGGCGTGCTCACACAGAAGAAGCCGTTTGCAGATGAGAAGAACATCCTGCACATCATGG
TG
AAGGTGGTGAAGGGCCACCGCCCCGAGCTGCCGCCCGTGTGCAGAGCCCGGCCGCGCGCCTGCAGCCA
C
CTGATACGCCTCATGCAGCGGTGCTGGCAGGGGGATCCGCGAGTTAGGCCCACCTTCCAAGAAATTACT
TCT
GAAACCGAGGACCTGTGTGAAAAGCCTGATGACGAAGTGAAAGAAACTGCTCATGATCTGGACGTGA
AA
AGCCCCCCGGAGCCCAGGAGCGAGGTGGTGCCTGCGAGGCTCAAGCGGGCCTCTGCCCCCACCTTCGA
T
AACGACTACAGCCTCTCCGAGCTGCTCTCACAGCTGGACTCTGGAGTTTCCCAGGCTGTCGAGGGCCCC
GAG
GAGCTCAGCCGCAGCTCCTCTGAGTCCAAGCTGCCATCGTCCGGCAGTGGGAAGAGGCTCTCGGGGG
TG
TCCTCGGTGGACTCCGCCTTCTCTTCCAGAGGATCACTGTCGCTGTCCTTTGAGCGGGAACCTTCAAC
C
AGCGATCTGGGCACCACAGACGTCCAGAAGAAGAAGCTTGTGGATGCCATCGTGTCCGGGGACACCAGC
AAA
CTGATGAAGATCCTGCAGCCGCAGGACGTGGACCTGGCACTGGACAGCGGTGCCAGCCTGCTGCACC
TG
GCGGTGGAGGCCGGGCAAGAGGAGTGCGCCAAGTGGCTGCTGCTCAACAATGCCAACCCCAACCTGAG
C
AACCGTAGGGGCTCCACCCCGTTGCACATGGCCGTGGAGAGGAGGGTGCGGGGTGTCGTGGAGCTCCTG
CTG
GCGCGGAAGATCAGTGTCAACGCCAAGGATGAGGACCAGTGGACAGCCCTCCACTTTGCAGCCCAGA
AC
GGGGACGAGTCTAGCACACGGCTGCTGTTGGAGAAGAACGCCTCGGTCAACGAGGTGGACTTTGAGGG
C
CGGACGCCCATGCACGTGGCCTGCCAGCACGGGCAGGAGAATATCGTGCGCATCCTGCTGCGCCGAGGC
GTG
GACGTGAGCCTGCAGGGCAAGGATGCCTGGCTGCCACTGCACTACGCTGCCTGGCAGGGCCACCTGC
CC
ATCGTCAAGCTGCTGGCCAAGCAGCCGGGGGTGAGTGTGAACGCCCAGACGCTGGATGGGAGGACGCC
A
TTGCACCTGGCCGCACAGCGCGGGCACTACCGCGTGGCCCGCATCCTCATCGACCTGTGCTCCGACGTC
AAC
GTCTGCAGCCTGCTGGCACAGACACCCCTGCACGTGGCCGCGGAGACGGGGCACACGAGCACTGCCA
GG
CTGCTCCTGCATCGGGGCGCTGGCAAGGAGGCCATGACCTCAGACGGCTACACCGCTCTGCACCTGGC
T
GCCCGCAACGGACACCTGGCCACTGTCAAGCTGCTTGTCGAGGAGAAGGCCGATGTGCTGGCCCGGGGA
CCC
CTGAACCAGACGGCGCTGCACCTGGCTGCCGCCCACGGGCACTCGGAGGTGGTGGAGGAGTTGGTCA
GC
GCCGATGTCATTGACCTGTTCGACGAGCAGGGGCTCAGCGCGCTGCACCTGGCCGCCCAGGGCCGGCA
C
GCACAGACGGTGGAGACTCTGCTCAGGCATGGGGCCCACATCAACCTGCAGAGCCTCAAGTTCCAGGGC
GGC
CATGGCCCCGCCGCCACGCTCCTGCGGCGAAGCAAGACCTAG


Translation (784 aa):
MEGDGGTPWALALLRTFDAGEFTGWEKVGSGGFGQVYKVRHVHWKTWLAIKCSPSLHVDDRERMELLEEA
K
KMEMAKFRYILPVYGICREPVGLVMEYMETGSLEKLLASEPLPWDLRFRIIHETAVGMNFLHCMAPPLL
H
LDLKPANILLDAHYHVK
ISDFGLAKCNGLSHSHDLSMDGLFGTIAYLPPERIREKSRLFDTKHDVYSFA
I
VIWGVLTQKKPFA
DEKNILHIMVKVVKGHRPELPPVCRARPRACSHLIRLMQRCWQGDPRVRPTFQEIT
S
ETEDLCEKPDDEVKETAHDLDVKSPPEPRSE
VVPARLKRASAPTFDNDYSLSELLSQLDSGVSQAVEGP
E
ELSRSSSESKLPSSGSGKRLSGVSSVDSAFSSRGSLSLSFEREPSTS
DLGTTDVQKKKLVDAIVSGDTS
K
LMKILQPQDVDLALDSGASLLHLAVEAGQEECAKWLLLNNANPNLSNRRGSTPLHMAVERRVRGVVELL
L
ARKISVNAKDEDQWTALHFAAQNGDESSTRLLLEKNASVNEVDFEGRTPMHVACQHGQENIVRILLRRG
V
DVSLQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDLCSDV
N
VCSLLAQTPLHVAAETGHTSTARLLLHRGAGKEAMTSDGYTALHLAARNGHLATVKLLVEEKADVLARG
P
LNQTALHLAAAHGHSEVVEELVSADVIDLFDEQGLSALHLAAQGRHAQTVETLLRHGAHINLQSLKFQG
G
HGPAATLLRRSKT




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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