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Report for CCDS34954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34954.1 Public Homo sapiens 8 GPIHBP1 24 110 108 CCDS HistoryNCBI Gene:338328Re-query CCDS DB by CCDS ID:34954.1Re-query CCDS DB by GeneID:338328See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34954.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622500.2 ENSP00000480053.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000622500.2Link to Ensembl Protein Viewer:ENSP00000480053.1Re-query CCDS DB by Nucleotide ID:ENST00000622500Re-query CCDS DB by Protein ID:ENSP00000480053
Original member Current member NCBI NM_178172.6 NP_835466.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178172.6Link to Protein Sequence:NP_835466.2Re-query CCDS DB by Nucleotide ID:NM_178172Re-query CCDS DB by Protein ID:NP_835466Link to BLAST:NP_835466.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835466.2 184 Q8IV16 184 100% 0 0

Chromosomal Locations for CCDS 34954.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143213268 143213319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143213822 143213950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143215013 143215126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143215259 143215518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGAAGGCGCTCGGGGCTGTCCTGCTTGCCCTCTTGCTGTTCGGGCGGCCAGGGAGAGGGCAGACACAGC
AGGAGGAAGAGGAAGAGGACGAGGACCACGGGCCAGATGACTACGACGAGGAAGATGAGGATGAGGTGGA
AGAGGAGGAGACCAACAGGCTCCCTGGTGGCAGGAGCAGAGTGCTGCTGCGGTGCTACACCTGCAAGTCC
CTGCCCAGGGACGAGCGCTGCAACCTGACGCAGAACTGCTCACATGGCCAGACCTGCACAACCCTCATTG
CCCACGGGAACACCGAGTCAGGCCTCCTGACCACCCACTCCACGTGGTGCACAGACAGCTGCCAGCCCAT
CACCAAGACGGTGGAGGGGACCCAGGTGACCATGACCTGCTGCCAGTCCAGCCTGTGCAATGTCCCACCC
TGGCAAAGCTCCCGAGTCCAGGACCCAACAGGCAAGGGGGCAGGCGGCCCCCGGGGCAGCTCCGAAACTG
TGGGCGCAGCCCTCCTGCTCAACCTCCTTGCCGGCCTTGGAGCAATGGGGGCCAGGAGACCCTGA

Translation (184 aa):
MKALGAVLLALLLFGRPGRGQTQQEEEEEDEDHGPDDYDEEDEDEVEEEETNRLPGGRSRVLLRCYTCKS
LPRDERCNLTQNCSHGQTCTTLIAHGNTESGLLTTHSTWCTDSCQPITKTVEGTQVTMTCCQSSLCNVPP
WQSSRVQDPTGKGAGGPRGSSETVGAALLLNLLAGLGAMGARRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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