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Report for CCDS8829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8829.1 Public Homo sapiens 12 KRT6C 24 110 108 CCDS HistoryNCBI Gene:286887Re-query CCDS DB by CCDS ID:8829.1Re-query CCDS DB by GeneID:286887See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8829.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252250.7 ENSP00000252250.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252250.7Link to Ensembl Protein Viewer:ENSP00000252250.6Re-query CCDS DB by Nucleotide ID:ENST00000252250Re-query CCDS DB by Protein ID:ENSP00000252250
Original member Current member NCBI NM_173086.5 NP_775109.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173086.5Link to Protein Sequence:NP_775109.2Re-query CCDS DB by Nucleotide ID:NM_173086Re-query CCDS DB by Protein ID:NP_775109Link to BLAST:NP_775109.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775109.2 564 P48668 564 100% 0 0

Chromosomal Locations for CCDS 8829.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52469062 52469297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52469411 52469445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52469670 52469890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52470505 52470630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52471132 52471296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52471421 52471516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52471672 52471732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52472066 52472280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52473198 52473737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGGCCAGCACATCCACCACCATCAGGAGCCACAGCAGCAGCCGCCGGGGTTTCAGTGCCAACTCAGCCA
GGCTCCCTGGGGTCAGCCGCTCTGGCTTCAGCAGCATCTCCGTGTCCCGCTCCAGGGGCAGTGGTGGCCT
GGGTGGTGCATGTGGAGGAGCTGGCTTTGGCAGCCGCAGTCTGTATGGCCTGGGGGGCTCCAAGAGGATC
TCCATTGGAGGGGGCAGCTGTGCCATCAGTGGCGGCTATGGCAGCAGAGCCGGAGGCAGCTATGGCTTTG
GTGGCGCCGGGAGTGGATTTGGTTTCGGTGGTGGAGCCGGCATTGGCTTTGGTCTGGGTGGTGGAGCCGG
CCTTGCTGGTGGCTTTGGGGGCCCTGGCTTCCCTGTGTGCCCCCCTGGAGGCATCCAAGAGGTCACCGTC
AACCAGAGTCTCCTGACTCCCCTCAACCTGCAAATTGACCCCGCCATCCAGCGGGTGCGGGCCGAGGAGC
GTGAGCAGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCATCGACAAGGTGCGGTTCCTAGAGCAGCA
GAACAAGGTTCTGGACACCAAGTGGACCCTGCTGCAGGAGCAGGGCACCAAGACTGTGAGGCAGAACCTG
GAGCCGTTGTTCGAGCAGTACATCAACAACCTCAGGAGGCAGCTGGACAGCATCGTCGGGGAACGGGGCC
GCCTGGACTCGGAGCTGAGAAACATGCAGGACCTGGTGGAGGACCTCAAGAACAAATATGAGGATGAAAT
CAACAAGCGCACAGCAGCAGAGAATGAATTTGTGACTCTGAAGAAGGATGTGGATGCTGCCTACATGAAC
AAGGTTGAACTGCAAGCCAAGGCAGACACTCTCACAGATGAGATCAACTTCCTGAGAGCCTTGTATGATG
CAGAGCTGTCCCAGATGCAGACCCACATCTCAGACACATCCGTGGTGCTATCCATGGACAACAACCGCAA
CCTGGACCTGGACAGCATCATCGCTGAGGTCAAGGCCCAATACGAGGAGATTGCTCAGAGGAGCCGGGCT
GAGGCTGAGTCCTGGTACCAGACCAAGTACGAGGAGCTGCAGGTCACAGCAGGCAGACATGGGGACGACC
TGCGCAACACCAAGCAGGAGATTGCTGAGATCAACCGCATGATCCAGAGGCTGAGATCTGAGATCGACCA
TGTCAAGAAGCAGTGTGCCAGCCTGCAGGCTGCCATTGCTGATGCTGAGCAGCGTGGGGAGATGGCACTC
AAGGATGCTAAGAACAAGCTGGAAGGGCTGGAGGATGCCCTGCAGAAGGCCAAGCAGGACCTGGCCCGGC
TGCTGAAGGAGTACCAGGAGCTGATGAATGTCAAGCTGGCCCTGGATGTGGAGATCGCCACCTACCGCAA
GCTGCTGGAGGGCGAGGAGTGCAGGCTGAATGGCGAAGGCGTTGGACAAGTCAACGTCTCTGTAGTACAG
TCCACCATCTCCAGTGGCTATGGCGGTGCCAGCGGTGTCGGCAGTGGCTTAGGCCTGGGTGGAGGAAGCA
GCTACTCCTATGGCAGTGGTCTTGGCATTGGAGGTGGCTTCAGTTCCAGCAGTGGCAGAGCCATTGGGGG
TGGCCTCAGCTCTGTTGGAGGCGGCAGTTCCACCATCAAGTACACCACCACCTCCTCCTCCAGCAGGAAG
AGCTACAAGCACTAA

Translation (564 aa):
MASTSTTIRSHSSSRRGFSANSARLPGVSRSGFSSISVSRSRGSGGLGGACGGAGFGSRSLYGLGGSKRI
SIGGGSCAISGGYGSRAGGSYGFGGAGSGFGFGGGAGIGFGLGGGAGLAGGFGGPGFPVCPPGGIQEVTV
NQSLLTPLNLQIDPAIQRVRAEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWTLLQEQGTKTVRQNL
EPLFEQYINNLRRQLDSIVGERGRLDSELRNMQDLVEDLKNKYEDEINKRTAAENEFVTLKKDVDAAYMN
KVELQAKADTLTDEINFLRALYDAELSQMQTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRA
EAESWYQTKYEELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCASLQAAIADAEQRGEMAL
KDAKNKLEGLEDALQKAKQDLARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGQVNVSVVQ
STISSGYGGASGVGSGLGLGGGSSYSYGSGLGIGGGFSSSSGRAIGGGLSSVGGGSSTIKYTTTSSSSRK
SYKH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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