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Report for CCDS3740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3740.1 Public Homo sapiens 4 SCLT1 24 110 108 CCDS HistoryNCBI Gene:132320Re-query CCDS DB by CCDS ID:3740.1Re-query CCDS DB by GeneID:132320See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3740.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281142.10 ENSP00000281142.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281142.10Link to Ensembl Protein Viewer:ENSP00000281142.5Re-query CCDS DB by Nucleotide ID:ENST00000281142Re-query CCDS DB by Protein ID:ENSP00000281142
Original member Current member NCBI NM_144643.4 NP_653244.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144643.4Link to Protein Sequence:NP_653244.2Re-query CCDS DB by Nucleotide ID:NM_144643Re-query CCDS DB by Protein ID:NP_653244Link to BLAST:NP_653244.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653244.2 688 Q96NL6-1 688 100% 0 0

Chromosomal Locations for CCDS 3740.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 128884477 128884539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128888679 128888774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128891059 128891137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128936655 128936851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128942996 128943188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128946007 128946152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128948496 128948570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128952769 128952840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128957026 128957124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128959600 128959777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128965227 128965318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128970378 128970468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128992167 128992237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128997874 128997939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128999672 128999794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129003741 129003876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129039041 129039096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129043395 129043467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129043993 129044051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129082306 129082373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129093070 129093103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGGCTGCAGAAATCGACTTTCTGAGAGAGCAAAATCGAAGACTAAATGAAGATTTTAGGCGGTATCAAA
TGGAAAGTTTTTCCAAATATTCATCTGTACAGAAAGCTGTCTGCCAAGGAGAAGGAGACGACACATTTGA
AAACCTAGTATTTGACCAAAGCTTTTTAGCTCCTCTTGTTACTGAGTATGATAAACACCTAGGAGAACTA
AATGGGCAGCTGAAATATTACCAGAAACAGGTGGGTGAGATGAAATTACAACTTGAAAATGTCATCAAGG
AAAATGAAAGGTTGCACAGTGAATTAAAAGATGCTGTTGAAAAAAAATTGGAGGCCTTTCCCCTGGGCAC
AGAGGTAGGAACTGACATATATGCAGATGATGAAACAGTCAGAAACCTTCAAGAACAATTGCAGCTAGCC
AATCAAGAAAAAACTCAGGCTGTGGAACTCTGGCAGACTGTTTCTCAGGAGTTGGACAGACTACACAAGC
TTTACCAGGAACATATGACTGAGGCCCAGATTCATGTATTTGAAAGTCAAAAACAAAAGGATCAGCTATT
TGATTTTCAACAACTGACCAAACAACTTCATGTTACTAATGAGAACATGGAAGTGACTAACCAACAGTTT
CTGAAAACAGTAACTGAACAAAGTGTGATAATCGAACAACTCCGAAAAAAACTTAGGCAAGCCAAATTAG
AGCTGAGAGTTGCTGTAGCAAAAGTGGAAGAGTTAACTAATGTGACTGAAGATCTGCAGGGACAGATGAA
AAAGAAGGAGAAGGATGTGGTGTCTGCCCATGGAAGAGAGGAAGCATCAGATAGGCGTTTACAGCAGTTA
CAGTCTAGTATAAAACAATTAGAAATAAGATTATGTGTGACAATCCAAGAAGCCAACCAATTAAGAACCG
AAAATACACATCTGGAAAAACAGACCAGAGAGCTACAAGCAAAGTGCAATGAATTAGAAAATGAGAGATA
TGAGGCTATTGTAAGAGCCAGAAATAGCATGCAACTCTTAGAAGAAGCTAACCTTCAAAAAAGTCAGGCT
CTACTTGAGGAGAAGCAAAAAGAAGAAGACATAGAGAAAATGAAAGAGACAGTTTCTCGGTTTGTACAAG
ATGCTACCATAAGAACCAAGAAAGAAGTTGCAAACACCAAAAAACAATGTAATATACAAATTTCTCGATT
AACAGAAGAACTTTCAGCCCTTCAAATGGAGTGTGCTGAAAAACAAGGCCAAATTGAACGAGTCATTAAG
GAAAAAAAAGCAGTGGAAGAAGAACTAGAAAAGATTTACCGTGAAGGCAGAGGAAATGAGAGTGATTACA
GAAAACTGGAAGAAATGCACCAAAGATTCCTGGTTTCAGAGCGTTCAAAAGATGATCTTCAGCTAAGACT
TACGAGAGCAGAAAATAGAATAAAACAACTTGAAACTGACTCCTCAGAAGAAATATCACGTTACCAAGAA
ATGATTCAGAAACTTCAAAATGTATTGGAGTCTGAGAGAGAGAACTGTGGGCTTGTCAGTGAACAAAGGC
TAAAACTTCAGCAAGAAAATAAACAGTTACGGAAAGAGACTGAGAGTTTAAGGAAGATTGCCCTGGAGGC
TCAAAAAAAAGCCAAAGTAAAGATCAGTACAATGGAACATGAATTTTCAATAAAGGAACGTGGATTTGAA
GTTCAATTGAGAGAGATGGAAGACAGTAATAGAAATTCCATTGTTGAACTGAGGCATCTCCTAGCGACTC
AACAGAAGGCAGCCAATAGGTGGAAAGAAGAAACGAAGAAACTTACTGAAAGTGCAGAAATTAGAATCAA
TAATCTAAAGAGTGAGCTGAGTCGACAGAAACTTCATACCCAAGAGCTGCTTTCTCAGCTGGAAATGGCA
AATGAAAAGGTAGCTGAGAATGAAAAGCTAATTCTAGAGCATCAAGAAAAAGCCAACAGACTTCAAAGGC
GTCTAAGTCAGGCAGAAGAGAGAGCTGCTTCAGCTTCCCAGCAGCTCAGTGTGATTACAGTGCAGAGAAG
AAAAGCAGCCTCCCTGATGAATCTGGAAAATATTTAA

Translation (688 aa):
MAAEIDFLREQNRRLNEDFRRYQMESFSKYSSVQKAVCQGEGDDTFENLVFDQSFLAPLVTEYDKHLGEL
NGQLKYYQKQVGEMKLQLENVIKENERLHSELKDAVEKKLEAFPLGTEVGTDIYADDETVRNLQEQLQLA
NQEKTQAVELWQTVSQELDRLHKLYQEHMTEAQIHVFESQKQKDQLFDFQQLTKQLHVTNENMEVTNQQF
LKTVTEQSVIIEQLRKKLRQAKLELRVAVAKVEELTNVTEDLQGQMKKKEKDVVSAHGREEASDRRLQQL
QSSIKQLEIRLCVTIQEANQLRTENTHLEKQTRELQAKCNELENERYEAIVRARNSMQLLEEANLQKSQA
LLEEKQKEEDIEKMKETVSRFVQDATIRTKKEVANTKKQCNIQISRLTEELSALQMECAEKQGQIERVIK
EKKAVEEELEKIYREGRGNESDYRKLEEMHQRFLVSERSKDDLQLRLTRAENRIKQLETDSSEEISRYQE
MIQKLQNVLESERENCGLVSEQRLKLQQENKQLRKETESLRKIALEAQKKAKVKISTMEHEFSIKERGFE
VQLREMEDSNRNSIVELRHLLATQQKAANRWKEETKKLTESAEIRINNLKSELSRQKLHTQELLSQLEMA
NEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVITVQRRKAASLMNLENI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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