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Report for CCDS55304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55304.1 Public Homo sapiens 9 FAM219A 24 110 108 CCDS HistoryNCBI Gene:203259Re-query CCDS DB by CCDS ID:55304.1Re-query CCDS DB by GeneID:203259See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55304.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445726.5 ENSP00000392452.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445726.5Link to Ensembl Protein Viewer:ENSP00000392452.1Re-query CCDS DB by Nucleotide ID:ENST00000445726Re-query CCDS DB by Protein ID:ENSP00000392452
Original member Current member EBI ENST00000651358.1 ENSP00000499069.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651358.1Link to Ensembl Protein Viewer:ENSP00000499069.1Re-query CCDS DB by Nucleotide ID:ENST00000651358Re-query CCDS DB by Protein ID:ENSP00000499069
Original member Current member NCBI NM_001184940.2 NP_001171869.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001184940.2Link to Protein Sequence:NP_001171869.1Re-query CCDS DB by Nucleotide ID:NM_001184940Re-query CCDS DB by Protein ID:NP_001171869Link to BLAST:NP_001171869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171869.1 185 Q8IW50-1 185 100% 0 0

Chromosomal Locations for CCDS 55304.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34400964 34401122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34401666 34401720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34402387 34402467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34402705 34402807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34405865 34405964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34458204 34458263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGATGGAGGAGATCGACCGGTTCCAGGTGCCCACCGCGCACTCGGAGATGCAGCCGCTGGACCCAGCCG
CCGCCTCCATCTCTGACGGAGACTGTGACGCCCGGGAGGGTGAGTCAGTAGCCATGAATTACAAACCATC
CCCGCTCCAAGTGAAGCTGGAGAAGCAGCGGGAGCTGGCCCGGAAGGGCTCCCTGAAGAATGGCAGCATG
GGTAGCCCTGTCAACCAGCAACCCAAGAAGAACAATGTCATGGCCCGAACAAGGCTGGTCGTCCCCAATA
AAGGCTACTCCTCACTTGACCAGAGCCCTGATGAGAAGCCACTGGTAGCCCTTGACACGGACAGCGATGA
TGACTTTGACATGTCTAGATACTCCTCCTCCGGCTACTCCTCTGCTGAGCAGATCAACCAAGATTTGAAC
ATCCAGCTGCTGAAGGACGGCTACCGGTTAGATGAGATCCCCGACGACGAGGACCTAGACCTCATCCCCC
CCAAGTCCGTGAACCCCACGTGCATGTGCTGCCAGGCCACGTCCTCCACCGCCTGCCACATTCAGTAG

Translation (185 aa):
MMEEIDRFQVPTAHSEMQPLDPAAASISDGDCDAREGESVAMNYKPSPLQVKLEKQRELARKGSLKNGSM
GSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLN
IQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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