NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31286.1 Public Homo sapiens 10 AFAP1L2 24 110 108 CCDS HistoryNCBI Gene:84632Re-query CCDS DB by CCDS ID:31286.1Re-query CCDS DB by GeneID:84632See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31286.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304129.9 ENSP00000303042.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304129.9Link to Ensembl Protein Viewer:ENSP00000303042.4Re-query CCDS DB by Nucleotide ID:ENST00000304129Re-query CCDS DB by Protein ID:ENSP00000303042
Original member Current member NCBI NM_001001936.3 NP_001001936.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001936.3Link to Protein Sequence:NP_001001936.1Re-query CCDS DB by Nucleotide ID:NM_001001936Re-query CCDS DB by Protein ID:NP_001001936Link to BLAST:NP_001001936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001936.1 818 Q8N4X5-1 818 100% 0 0

Chromosomal Locations for CCDS 31286.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 114296042 114296068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114296978 114297100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114297220 114297413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114299260 114299415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114300194 114300362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114300445 114300690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114301354 114301465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114302339 114302484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114304719 114304930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114307805 114307909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114308433 114308517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114310354 114310443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114313871 114314050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114315560 114315765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114323171 114323261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114331803 114331897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114333221 114333295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114340603 114340731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114404440 114404455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2457 nt):
ATGGAGCGGTACAAAGCCCTGGAACAGCTGCTGACAGAGTTGGATGACTTCCTCAAGATTCTTGACCAGG
AGAACCTGAGCAGCACAGCACTGGTGAAGAAGAGCTGCCTGGCGGAGCTCCTCCGGCTTTACACCAAAAG
CAGCAGCTCTGATGAGGAGTACATTTATATGAACAAAGTGACCATCAACAAGCAACAGAATGCAGAGTCT
CAAGGCAAAGCGCCTGAGGAGCAGGGCCTGCTACCCAATGGGGAGCCCAGCCAGCACTCCTCGGCCCCTC
AGAAGAGCCTTCCAGACCTCCCGCCACCCAAGATGATTCCAGAACGGAAACAGCTTGCCATCCCAAAGAC
GGAGTCTCCAGAGGGCTACTATGAAGAGGCTGAGCCATATGACACATCCCTCAATGAGGACGGAGAGGCT
GTGAGCAGCTCCTACGAGTCCTACGATGAAGAGGACGGCAGCAAGGGCAAGTCGGCCCCTTACCAGTGGC
CCTCGCCGGAGGCCGGCATCGAGCTGATGCGTGACGCCCGCATCTGCGCCTTCCTGTGGCGCAAGAAGTG
GCTGGGACAGTGGGCCAAGCAGCTCTGTGTCATCAAGGACAACAGGCTTCTGTGCTACAAATCCTCCAAG
GACCACAGCCCTCAGCTGGACGTGAACCTACTGGGCAGCAGCGTCATTCACAAGGAGAAGCAAGTGCGGA
AGAAGGAGCACAAGCTGAAGATCACGCCGATGAATGCCGATGTGATTGTGCTGGGCCTGCAGAGCAAGGA
CCAGGCTGAGCAGTGGCTCAGGGTCATCCAGGAAGTGAGCGGCCTGCCTTCCGAAGGAGCATCTGAAGGA
AACCAGTACACCCCGGATGCCCAGCGCTTTAACTGCCAGAAACCAGATATAGCTGAGAAGTACCTGTCGG
CTTCAGAGTATGGGAGCTCCGTGGATGGCCACCCTGAGGTCCCAGAAACCAAAGACGTCAAGAAGAAATG
TTCTGCTGGCCTCAAACTGAGCAACCTAATGAATCTGGGCAGGAAGAAATCCACCTCACTGGAGCCTGTG
GAGAGGTCCCTCGAGACATCCAGTTACCTGAACGTGCTGGTGAACAGCCAGTGGAAGTCTCGCTGGTGCT
CTGTCAGGGACAATCACCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAACCCCTCAG
CCTGGTGGGCTGCGAGGTGGTCCCAGACCCCAGCCCCGACCACCTCTACTCCTTCCGCATCCTCCACAAG
GGCGAGGAGCTGGCCAAGCTTGAGGCCAAGTCTTCCGAGGAAATGGGCCACTGGCTGGGTCTCCTGCTCT
CTGAGTCAGGCTCCAAGACAGACCCAGAAGAGTTCACCTACGACTATGTGGATGCCGATAGGGTCTCCTG
TATTGTGAGTGCGGCCAAAAACTCTCTCTTACTGATGCAGAGAAAGTTCTCAGAGCCCAACACTTACATC
GATGGCCTGCCTAGCCAGGACCGCCAGGAGGAGCTGTATGACGACGTGGACCTGTCAGAGCTCACAGCTG
CGGTGGAGCCTACCGAGGAAGCCACCCCTGTTGCAGATGACCCAAATGAGAGAGAATCTGACCGAGTGTA
CCTGGACCTCACACCTGTCAAGTCCTTTCTGCATGGCCCCAGCAGTGCACAGGCCCAGGCCTCCTCCCCG
ACGTTGTCCTGCCTGGACAATGCAACTGAGGCCCTCCCGGCAGACTCAGGCCCAGGTCCCACCCCAGATG
AGCCCTGCATAAAGTGTCCAGAGAACCTGGGAGAACAGCAGCTGGAGAGTTTGGAGCCAGAGGATCCTTC
CCTGAGAATCACCACCGTCAAAATCCAGACGGAACAGCAGAGAATCTCCTTCCCACCGAGCTGCCCGGAT
GCCGTGGTGGCCACCCCACCTGGTGCCAGCCCACCTGTGAAGGACAGGTTGCGCGTGACCAGTGCAGAGA
TCAAGCTTGGCAAGAATCGGACAGAAGCTGAGGTGAAGCGGTACACAGAGGAGAAGGAGAGGCTTGAAAA
GAAGAAGGAAGAAATCCGGGGGCACCTGGCTCAGCTCCGGAAAGAGAAACGGGAGCTAAAGGAAACCCTA
CTGAAATGCACAGACAAGGAAGTCCTGGCGAGCCTGGAGCAGAAGCTGAAGGAAATTGACGAGGAGTGCC
GGGGCGAGGAGAGCAGGCGCGTGGACCTGGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGC
TGAGGCAGGGCCTGTGACGTTAGGCACCACCGTGGACACCACCCACCTGGAGAATGTGAGCCCCCGCCCC
AAAGCTGTCACACCTGCCTCTGCCCCAGACTGTACCCCAGTCAACTCTGCAACCACACTCAAGAACAGGC
CTCTCTCGGTCGTGGTCACAGGCAAAGGCACTGTACTCCAGAAAGCCAAGGAATGGGAGAAGAAAGGAGC
AAGTTAG

Translation (818 aa):
MERYKALEQLLTELDDFLKILDQENLSSTALVKKSCLAELLRLYTKSSSSDEEYIYMNKVTINKQQNAES
QGKAPEEQGLLPNGEPSQHSSAPQKSLPDLPPPKMIPERKQLAIPKTESPEGYYEEAEPYDTSLNEDGEA
VSSSYESYDEEDGSKGKSAPYQWPSPEAGIELMRDARICAFLWRKKWLGQWAKQLCVIKDNRLLCYKSSK
DHSPQLDVNLLGSSVIHKEKQVRKKEHKLKITPMNADVIVLGLQSKDQAEQWLRVIQEVSGLPSEGASEG
NQYTPDAQRFNCQKPDIAEKYLSASEYGSSVDGHPEVPETKDVKKKCSAGLKLSNLMNLGRKKSTSLEPV
ERSLETSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHLYSFRILHK
GEELAKLEAKSSEEMGHWLGLLLSESGSKTDPEEFTYDYVDADRVSCIVSAAKNSLLLMQRKFSEPNTYI
DGLPSQDRQEELYDDVDLSELTAAVEPTEEATPVADDPNERESDRVYLDLTPVKSFLHGPSSAQAQASSP
TLSCLDNATEALPADSGPGPTPDEPCIKCPENLGEQQLESLEPEDPSLRITTVKIQTEQQRISFPPSCPD
AVVATPPGASPPVKDRLRVTSAEIKLGKNRTEAEVKRYTEEKERLEKKKEEIRGHLAQLRKEKRELKETL
LKCTDKEVLASLEQKLKEIDEECRGEESRRVDLELSIMEVKDNLKKAEAGPVTLGTTVDTTHLENVSPRP
KAVTPASAPDCTPVNSATTLKNRPLSVVVTGKGTVLQKAKEWEKKGAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH