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Report for CCDS34450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34450.1 Public Homo sapiens 6 BYSL 24 110 108 CCDS HistoryNCBI Gene:705Re-query CCDS DB by CCDS ID:34450.1Re-query CCDS DB by GeneID:705See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34450.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230340.9 ENSP00000230340.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230340.9Link to Ensembl Protein Viewer:ENSP00000230340.4Re-query CCDS DB by Nucleotide ID:ENST00000230340Re-query CCDS DB by Protein ID:ENSP00000230340
Original member Current member NCBI NM_004053.4 NP_004044.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004053.4Link to Protein Sequence:NP_004044.3Re-query CCDS DB by Nucleotide ID:NM_004053Re-query CCDS DB by Protein ID:NP_004044Link to BLAST:NP_004044.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004044.3 437 Q13895 437 100% 0 0

Chromosomal Locations for CCDS 34450.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41921563 41921830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41927374 41927536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41930132 41930270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41930635 41930768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41931396 41931556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41931728 41931830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41932361 41932706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGCCCAAATTCAAGGCGGCCCGTGGGGTGGGGGGTCAGGAAAAACATGCGCCCCTGGCCGATCAGATCC
TGGCTGGGAATGCGGTGCGGGCGGGGGTCCGGGAGAAGCGGCGGGGTCGCGGGACAGGAGAAGCGGAGGA
AGAGTATGTGGGGCCCCGGCTGAGCCGACGGATTTTGCAGCAAGCACGGCAGCAACAGGAGGAACTCGAG
GCCGAGCATGGGACTGGGGACAAGCCCGCGGCGCCGCGGGAACGCACCACGCGGCTGGGTCCAAGAATGC
CTCAGGATGGATCAGATGACGAGGACGAGGAGTGGCCCACCCTGGAGAAGGCTGCCACAATGACAGCAGC
GGGCCATCATGCAGAGGTGGTTGTGGACCCTGAGGATGAGCGTGCCATAGAGATGTTCATGAACAAGAAC
CCTCCTGCCAGGCGCACCCTGGCTGACATCATCATGGAGAAGCTGACTGAGAAGCAGACAGAGGTTGAGA
CAGTCATGTCAGAGGTGTCGGGCTTCCCTATGCCCCAGCTGGACCCCCGGGTCCTAGAAGTGTACAGGGG
GGTCCGGGAGGTATTATCTAAGTACCGCAGTGGAAAACTGCCCAAGGCATTTAAGATCATCCCTGCACTC
TCCAACTGGGAGCAAATCCTCTACGTCACAGAGCCGGAGGCCTGGACTGCAGCTGCCATGTACCAGGCCA
CCAGGATTTTTGCCTCTAACCTGAAGGAACGCATGGCCCAGCGCTTCTACAACCTTGTCCTGCTCCCTCG
AGTACGAGATGACGTTGCTGAATACAAACGACTCAACTTCCATCTCTACATGGCTCTCAAGAAGGCCCTT
TTCAAACCTGGAGCCTGGTTCAAAGGGATCCTGATTCCACTGTGCGAGTCTGGCACTTGTACCCTCCGGG
AAGCCATCATTGTGGGTAGCATCATCACCAAGTGCTCCATCCCTGTGTTGCACTCCAGTGCGGCCATGCT
GAAAATTGCTGAGATGGAATACAGCGGTGCCAACAGCATCTTCCTGCGACTGCTGCTGGATAAGAAGTAT
GCACTGCCTTACCGGGTGCTGGATGCCCTAGTCTTCCACTTCCTGGGGTTCCGGACAGAGAAGCGTGAAC
TGCCTGTGCTGTGGCACCAGTGCCTCCTGACTTTGGTCCAGCGCTACAAGGCCGACTTGGCCACAGACCA
GAAAGAGGCCCTCTTAGAACTGCTCCGGCTGCAGCCCCATCCACAGCTATCGCCCGAAATCAGGCGTGAG
CTTCAGAGTGCAGTCCCCCGCGATGTGGAAGATGTTCCCATCACCGTGGAGTGA

Translation (437 aa):
MPKFKAARGVGGQEKHAPLADQILAGNAVRAGVREKRRGRGTGEAEEEYVGPRLSRRILQQARQQQEELE
AEHGTGDKPAAPRERTTRLGPRMPQDGSDDEDEEWPTLEKAATMTAAGHHAEVVVDPEDERAIEMFMNKN
PPARRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVREVLSKYRSGKLPKAFKIIPAL
SNWEQILYVTEPEAWTAAAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDVAEYKRLNFHLYMALKKAL
FKPGAWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLDKKY
ALPYRVLDALVFHFLGFRTEKRELPVLWHQCLLTLVQRYKADLATDQKEALLELLRLQPHPQLSPEIRRE
LQSAVPRDVEDVPITVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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