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Report for CCDS8101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8101.1 Public Homo sapiens 11 TIGD3 24 110 108 CCDS HistoryNCBI Gene:220359Re-query CCDS DB by CCDS ID:8101.1Re-query CCDS DB by GeneID:220359See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8101.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309880.6 ENSP00000308354.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309880.6Link to Ensembl Protein Viewer:ENSP00000308354.5Re-query CCDS DB by Nucleotide ID:ENST00000309880Re-query CCDS DB by Protein ID:ENSP00000308354
Original member Current member NCBI NM_145719.3 NP_663771.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145719.3Link to Protein Sequence:NP_663771.1Re-query CCDS DB by Nucleotide ID:NM_145719Re-query CCDS DB by Protein ID:NP_663771Link to BLAST:NP_663771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663771.1 471 Q6B0B8 471 100% 0 0

Chromosomal Locations for CCDS 8101.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65355809 65357224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGAGCTGAGCAGCAAGAAGAAGCTTCACGCCCTGTCCCTGGCCGAGAAGATCCAGGTGCTGGAACTCC
TGGATGAGTCCAAGATGTCCCAGTCGGAGGTGGCCCGGCGCTTCCAGGTTTCCCAGCCCCAGATCTCGCG
CATCTGCAAGAATAAGGAGAAGCTGCTGGCGGACTGGTGCAGCGGCACAGCCAACCGAGAGCGCAAGCGC
AAGCGGGAGTCCAAGTACAGCGGGATCGACGAGGCTCTGCTCTGCTGGTACCACATTGCCCGGGCCAAGG
CCTGGGACGTGACGGGGCCCATGCTGCTCCACAAAGCCAAGGAGCTGGCCGATATCATGGGCCAGGACTT
CGTGCCCAGCATCGGCTGGCTGGTCCGCTGGAAACGCCGAAACAACGTCGGCTTTGGGGCCCGCCATGTT
CTTGCGCCTTCATTCCCCCCTGAGCCACCTCCCCCGGGGCTCACATCCCAGGCTCAGCTGCCTCTTTCCC
TAAAAGACTTCTCTCCAGAGGACGTGTTTGGCTGTGCTGAATTGCCCTTGCTGTATCGGGCAGTGCCCGG
CAGCTTTGGTGCATGTGATCAAGTACAGGTGCTGCTGTGTGCCAACAGCAGGGGCACCGAGAAGCGGCGG
GTACTGCTGGGTGGGCTCCAGGCTGCCCCGAGATGCTTCTTTGGGATCCGCAGTGAGGCTCTGCCTGCCT
CCTACCACCCGGACCTGGGCATCCCCTGGTTAGAGTGGTTGGCACAGTTTGACCGGGACATGGGACAGCA
GGGCCGACAGGTGGCTTTGCTGCTGGCTGCCCGAGTGGTGGAGGAGCTGGCAGGCCTGCCTGGGCTCTAC
CACGTGAAGCTCTTGCCTCTGGCCGCCTCTAGCACCACGCCTCCCCTGCCCAGCTCAGTGGTCCGGGCCT
TTAAGGCCCATTACCGACACCGGCTGTTGGGCAAACTGGCTGCCATCCAAAGCGAGAGGGATGGCACCTC
GCTGGCCGAGGCCGGGGCAGGCATCACCGTGCTGGACGCCCTGCACGTGGCGTCTGCCGCCTGGGCCAAG
GTGCCTCCTCAGCTCATTTTCAGCAGCTTCATTCAAGAAGGGCTGGCTCCCGGCAAAACGCCCCCGTCCT
CGCACAAAACCTCTGAGATGCCACCAGTCCCCGGCGGGCTGAGCCTGGAGGAGTTTTCCCGCTTTGTGGA
CCTGGAGGGTGAGGAGCCAAGGTCTGGAGTATGTAAGGAGGAGATAGGCACTGAAGACGAGAAGGGGGAC
AGAGAGGGTGCCTTTGAGCCCCTGCCCACCAAAGCTGATGCCCTCCGGGCCCTGGGCACCTTGAGGAGGT
GGTTTGAATGCAACAGCACTTCTCCTGAGCTATTCGAAAAATTCTACGACTGTGAGGAGGAGGTGGAGCG
GCTTTGCTGCCTATGA

Translation (471 aa):
MELSSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANRERKR
KRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPSIGWLVRWKRRNNVGFGARHV
LAPSFPPEPPPPGLTSQAQLPLSLKDFSPEDVFGCAELPLLYRAVPGSFGACDQVQVLLCANSRGTEKRR
VLLGGLQAAPRCFFGIRSEALPASYHPDLGIPWLEWLAQFDRDMGQQGRQVALLLAARVVEELAGLPGLY
HVKLLPLAASSTTPPLPSSVVRAFKAHYRHRLLGKLAAIQSERDGTSLAEAGAGITVLDALHVASAAWAK
VPPQLIFSSFIQEGLAPGKTPPSSHKTSEMPPVPGGLSLEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGD
REGAFEPLPTKADALRALGTLRRWFECNSTSPELFEKFYDCEEEVERLCCL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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