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Report for CCDS3461.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3461.2 Public Homo sapiens 4 NSUN7 24 110 108 CCDS HistoryNCBI Gene:79730Re-query CCDS DB by CCDS ID:3461.2Re-query CCDS DB by GeneID:79730See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 3461.1
The coding region has been updated to represent an alternate exon that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3461.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381782.7 ENSP00000371201.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381782.7Link to Ensembl Protein Viewer:ENSP00000371201.2Re-query CCDS DB by Nucleotide ID:ENST00000381782Re-query CCDS DB by Protein ID:ENSP00000371201
Original member Current member NCBI NM_024677.6 NP_078953.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024677.6Link to Protein Sequence:NP_078953.4Re-query CCDS DB by Nucleotide ID:NM_024677Re-query CCDS DB by Protein ID:NP_078953Link to BLAST:NP_078953.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078953.4 718 Q8NE18-1 718 100% 0 0

Chromosomal Locations for CCDS 3461.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40750694 40750991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40760434 40760492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40761171 40761301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40774265 40774417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40774767 40774950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40776049 40776259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40790602 40790745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40794375 40794476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40798787 40798904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40807061 40807184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40808307 40808939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGCTGAATTCCACGGGCGAACTGGAGTTTTCGAACGAAGAAGATCCCGAGATCATCTCCCAACTCACTT
CCCTGCCTCTGTCCGGTGGGAAAAGCTCAGCTGGTGTGCCCGAAAAAACGGGCTATCCGGACTCCGTTTA
TGTCATGGCAGCCAACATTTTTCAGGGTATTCGAATCGAAAAGTCGGCACAGAAAGTCTTAATCAAGTAT
GGGAATGAACCCCTGCGGTCCTTGTCCGAGTCTGAGGATCAGTCCTTTCAGCGTTTGTCTTATGAGCTGG
CTTTCAGTGCCCTGAAATATCAAGATATTTTGGAAACTATATTGATAGACAGCTGTATCTTCCCAAGTAC
CACAATACCAGATCATTTGAGCAGTCTTATTATTGTGATGCTATATGATTTCCAAGATAGAAAATTTCAA
ACTCGTGTCCTTTCTGATAATGAAGAGCCCATATCAGAAGTTCAAGAAGTAGAGAACCTTCTTAACAGTT
TTAAGATAAAATTGGCTGCAGCATTGGCAAGATGTCGAATCAAGCATGATGCCCTTTCAATTTACCACAT
CCTTCCAGAAACAGTTAGGAAACAGGAACTAAGGGCCTCCACTTTACCACTTTATGCTTGGATAAATACT
TGTAAAATCAGCCCTGAAGAAGTTTATAATAATTTGAAGAGAAGAGGCTATAATAAAGTCAAATCTGTAT
TGCATATTGATGATAAAGTCTTTGCTGTGGATCAACATTGCTATGATGTCTTAATTTTTCCATCTCATCT
TAAAAATGATCTTATAAATATAGATCTTTTCAAAGATTACAAACTTATATTTCAGGACAAATCTCGAAGT
CTTGCTGTCCATTCTGTAAAGGCTTTATTAAATATGGATGATGATGTCTTAATGGTCAATACAGGCTCAT
GGTACACAGTTTCCCACATGTCAATTTTAACAAATAATAATACCTCAAAAGTATTTGTGTGTGGAGTACA
ATCACAAGCTAAGGATCCTGACTTGAAGACCCTTTTCACAAAAATAGGATGTAAAAATATTGAAATACTT
CATGAGAAATTTATTAACATTGAATCAAAGGATCACAGGTTACAGAAAGTTAAAGTGATTTTGCTGCTAC
CTCGTTGTTCAGGACTGGGTGTTAGTAATCCAGTAGAATTTATTTTAAATGAACATGAAGATACAGAATT
CCTTAAAGATCACTCTCAAGGAGGCATCTCAGTGGACAAACTTCACGTTCTTGCTCAACAGCAGTATGAA
CAGCTAACACATGCAATGAAATTTACTAAAGCTCAAGCAGTTGTTTACTGCACATGTTCAGTTTTTCCAG
AAGAAAATGAAGCTGTTGTTAAGAAAGCACTGGAATTTCAAGACCTTGGGAATAAAGGACAACCTTACAG
GCTTAGTCCTCCTGTTCTTCCACTGTGCTCCTTAAAGGAAATTCAATTGTCTACTGATAAATTTTTCAGA
ATGGAACCATCTGAAATTACCAATGGTTGTTTTCTTTCTATTTTAACAAGGGAGCGGGACCCTTCTGAGA
CAGTGTCTGTGAATGATGTTTTGGCCCGAGCTGCAGCCAAGGGTCTGCTGGATGGGATTGAGTTGGGTAA
ATCATCAAAACGGGAGAAGAAGAAGAAAAAATCAAAAACATCATTGACAAAAGGTGCCACTACTGATAAT
GGCATCCAAATGAAAATTGCTGAGTTCCTGAATCGAGAAACTAAAGCCAGTGCTAATCTATCAGAGACTG
TAACAAAACCACCTCTTCCCCAGAAAAATACTGCTCAAGTGGGGGCTTCCTCACAGACCAGAAAACCCAA
CAAGCTGGCCCCCCATCCTGCAGTGCCTGCATTTGTGAAGAACACTTGTCCCTCCAGACCGCGTGAACGG
CAGACACACTTCTTAAGACCTCGGCCAGAAGACAGAATGGTTGCTCTGAAACCCATCAAGATTGTTCTGC
CTCCAGTCTTTATGCCATTTTCAAGTCCCCAAGGGATCAGATCTCGGATGCCAACTCAACATTTGTACTG
TCGTTGGGTTGCACCCAAGGCACTTGTGCCCACCTGCCTTCCCACACACTCACTATCCAGAAAAGAGGAA
AAGCCTAAAGATGACACACCTTCCTCCCTACTCAGGCCTCCTCGGCGATGGCTTTGA

Translation (718 aa):
MLNSTGELEFSNEEDPEIISQLTSLPLSGGKSSAGVPEKTGYPDSVYVMAANIFQGIRIEKSAQKVLIKY
GNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSCIFPSTTIPDHLSSLIIVMLYDFQDRKFQ
TRVLSDNEEPISEVQEVENLLNSFKIKLAAALARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINT
CKISPEEVYNNLKRRGYNKVKSVLHIDDKVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRS
LAVHSVKALLNMDDDVLMVNTGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEIL
HEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYE
QLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFR
MEPSEITNGCFLSILTRERDPSETVSVNDVLARAAAKGLLDGIELGKSSKREKKKKKSKTSLTKGATTDN
GIQMKIAEFLNRETKASANLSETVTKPPLPQKNTAQVGASSQTRKPNKLAPHPAVPAFVKNTCPSRPRER
QTHFLRPRPEDRMVALKPIKIVLPPVFMPFSSPQGIRSRMPTQHLYCRWVAPKALVPTCLPTHSLSRKEE
KPKDDTPSSLLRPPRRWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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