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Report for CCDS44250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44250.1 Public Homo sapiens 1 ETV3 24 110 108 CCDS HistoryNCBI Gene:2117Re-query CCDS DB by CCDS ID:44250.1Re-query CCDS DB by GeneID:2117See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44250.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368192.9 ENSP00000357175.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368192.9Link to Ensembl Protein Viewer:ENSP00000357175.4Re-query CCDS DB by Nucleotide ID:ENST00000368192Re-query CCDS DB by Protein ID:ENSP00000357175
Original member Current member NCBI NM_001145312.3 NP_001138784.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145312.3Link to Protein Sequence:NP_001138784.1Re-query CCDS DB by Nucleotide ID:NM_001145312Re-query CCDS DB by Protein ID:NP_001138784Link to BLAST:NP_001138784.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138784.1 512 P41162-1 512 100% 0 0

Chromosomal Locations for CCDS 44250.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 157124841 157125979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157134112 157134227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157135471 157135708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157136307 157136352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGAAAGCCGGCTGTAGCATCGTGGAAAAGCCAGAAGGAGGTGGAGGGTATCAGTTTCCTGACTGGGCCT
ACAAAACAGAGTCATCCCCAGGCTCCCGGCAGATCCAGCTGTGGCACTTCATCCTGGAGCTGCTGCAGAA
GGAAGAGTTCCGCCATGTCATCGCCTGGCAGCAGGGAGAGTACGGGGAATTTGTCATCAAGGATCCAGAT
GAGGTGGCCCGCCTCTGGGGCCGCAGGAAATGCAAACCACAGATGAATTATGACAAGCTGAGCCGGGCCC
TCAGATACTATTACAACAAGAGGATCCTTCATAAAACAAAAGGGAAAAGATTTACCTATAAATTTAACTT
CAACAAGCTGGTGATGCCCAACTACCCATTCATCAACATTCGGTCAAGTGGTGTGGTTCCTCAGAGTGCA
CCACCAGTGCCAACAGCCTCTTCCCGGTTCCATTTCCCACCTCTGGACACCCATTCTCCAACCAATGATG
TGCAGCCGGGACGGTTCTCTGCTAGCTCCCTAACTGCTTCTGGCCAGGAGTCCAGTAATGGTACTGATAG
AAAGACTGAGCTTTCAGAGCTGGAGGATGGCTCAGCTGCTGACTGGCGCCGGGGTGTGGATCCCGTGTCC
TCCAGGAATGCCATTGGTGGAGGAGGGATTGGCCATCAGAAACGCAAGCCTGACATAATGCTTCCTCTGT
TTGCTAGGCCAGGGATGTACCCTGACCCCCACAGTCCCTTCGCTGTCTCTCCAATCCCTGGCCGCGGAGG
TGTCCTTAATGTCCCCATTTCACCAGCCCTCTCCCTGACTCCCACCATCTTCTCCTATAGCCCATCACCA
GGCCTGAGCCCTTTCACCAGCAGCAGCTGCTTCTCCTTCAACCCTGAGGAAATGAAACACTACCTTCATT
CTCAAGCTTGTTCTGTGTTCAACTACCATCTGAGTCCTCGGACTTTTCCCCGTTACCCAGGGCTCATGGT
TCCACCACTGCAGTGCCAAATGCATCCTGAGGAGTCAACTCAGTTCTCCATCAAGCTGCAGCCCCCACCA
GTTGGGCGGAAGAACCGGGAGAGGGTTGAGAGCAGCGAGGAGTCAGCACCAGTCACCACGCCCACCATGG
CTTCTATTCCCCCAAGAATCAAGGTGGAACCTGCCTCTGAAAAGGATCCTGAGAGCCTCAGGCAGTCGGC
ACGAGAGAAGGAGGAGCACACTCAAGAAGAGGGCACTGTGCCAAGCAGGACCATTGAAGAGGAAAAAGGC
ACCATCTTTGCCCGTCCTGCTGCACCACCCATCTGGCCCTCTGTGCCCATTAGCACCCCAAGTGGAGAAC
CTCTGGAGGTGACTGAAGACAGTGAGGATAGGCCTGGCAAAGAGCCCAGTGCACCTGAGAAGAAAGAAGA
TGCACTGATGCCCCCCAAGCTTCGGTTGAAGCGGCGCTGGAATGATGACCCTGAAGCCCGAGAGCTGAGC
AAGAGTGGCAAGTTTCTCTGGAATGGGTCAGGACCCCAGGGCTTGGCAACAGCAGCTGCTGATGCTTAG

Translation (512 aa):
MKAGCSIVEKPEGGGGYQFPDWAYKTESSPGSRQIQLWHFILELLQKEEFRHVIAWQQGEYGEFVIKDPD
EVARLWGRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFNKLVMPNYPFINIRSSGVVPQSA
PPVPTASSRFHFPPLDTHSPTNDVQPGRFSASSLTASGQESSNGTDRKTELSELEDGSAADWRRGVDPVS
SRNAIGGGGIGHQKRKPDIMLPLFARPGMYPDPHSPFAVSPIPGRGGVLNVPISPALSLTPTIFSYSPSP
GLSPFTSSSCFSFNPEEMKHYLHSQACSVFNYHLSPRTFPRYPGLMVPPLQCQMHPEESTQFSIKLQPPP
VGRKNRERVESSEESAPVTTPTMASIPPRIKVEPASEKDPESLRQSAREKEEHTQEEGTVPSRTIEEEKG
TIFARPAAPPIWPSVPISTPSGEPLEVTEDSEDRPGKEPSAPEKKEDALMPPKLRLKRRWNDDPEARELS
KSGKFLWNGSGPQGLATAAADA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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