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Report for CCDS49849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49849.1 Public Mus musculus 16 Hgd 23 108 98 CCDS HistoryNCBI Gene:15233Re-query CCDS DB by CCDS ID:49849.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160847.1 ENSMUSP00000125492.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160847.1Link to Ensembl Protein Viewer:ENSMUSP00000125492.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160847Re-query CCDS DB by Protein ID:ENSMUSP00000125492
Original member Current member NCBI NM_013547.3 NP_038575.2 Accepted alive Link to Nucleotide Sequence:NM_013547.3Link to Protein Sequence:NP_038575.2Re-query CCDS DB by Nucleotide ID:NM_013547Re-query CCDS DB by Protein ID:NP_038575Link to BLAST:NP_038575.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038575.2 445 O09173 445 100% 0 0

Chromosomal Locations for CCDS 49849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 37580322 37580336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37588691 37588762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37589691 37589779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37593354 37593459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37611115 37611174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37613240 37613331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37615363 37615397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37616176 37616255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37616752 37616851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37618858 37618982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37621849 37621953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37624257 37624383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37628422 37628603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37631676 37631825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGCAGAGTTAAAGTACATTTCTGGATTTGGGAATGAGTGTGCTTCAGAGGATCCTCGCTGTCCAGGTT
CCCTGCCCAAAGGACAGAATAATCCTCAGGTCTGCCCCTACAACCTCTACGCTGAGCAGCTCTCGGGATC
AGCCTTCACTTGTCCACGGAACACCAATAAGAGAAGCTGGCTGTATAGGATTCTTCCTTCAGTTTCTCAC
AAACCCTTTGAGTCCATCGACCAAGGCCATGTCACTCACAACTGGGATGAAGTTGGCCCTGATCCTAACC
AGCTAAGATGGAAACCATTTGAGATTCCAAAAGCGTCTGAGAAGAAAGTGGACTTTGTGAGTGGTTTGTA
CACCTTATGTGGAGCAGGAGACATCAAGTCTAACAACGGCCTTGCTGTGCACATTTTTCTGTGTAACTCC
TCCATGGAGAACAGGTGCTTTTACAACTCAGATGGGGATTTCCTGATTGTTCCCCAGAAAGGGAAACTTC
TCATTTACACCGAGTTTGGCAAGATGTCCCTGCAGCCCAATGAAATCTGCGTCATTCAGAGAGGAATGCG
ATTCAGCGTCGATGTCTTTGAGGAGACCAGGGGCTACATCCTGGAGGTCTATGGTGTCCACTTTGAGTTA
CCTGACCTGGGACCCATCGGAGCAAATGGCTTGGCCAATCCTCGAGATTTCTTGATTCCCGTTGCCTGGT
ATGAAGATCGTCGAGTGCCAGGTGGTTACACTGTGATTAATAAATTCCAGGGCAAGCTGTTTGCTTGCAA
ACAGGATGTCTCTCCATTCAATGTCGTGGCCTGGCATGGAAACTACACACCCTACAAGTACAACCTAGAG
AACTTCATGGTCATCAATGCGGTAGCCTTTGACCATGCGGATCCTTCCATTTTCACCGTGCTGACTGCCA
AATCCCTCCGACCTGGGGTGGCTATTGCTGACTTTGTCATCTTCCCACCTCGGTGGGGAGTTGCAGATAA
AACCTTCAGACCTCCTTATTACCACAGGAACTGCATGAGTGAGTTCATGGGCCTCATCAAAGGTCACTAT
GAGGCAAAGCAAGGTGGATTCCTGCCAGGGGGCGGCAGCCTGCACAGTGCCATGACCCCTCACGGCCCCG
ATGCAGACTGCTTTGAAAAGGCCAGCAAGGCCAAACTCGAGCCAGAGAGGATAGCTGACGGCACCATGGC
GTTTATGTTTGAATCTTCCTTAAGTTTGGCGGTCACCAAGTGGGGACTCAAGACCTGTAGCTGTTTGGAT
GAGAACTACTACAAATGTTGGGAGCCTCTCCGGAGCCACTTCACCCCCAATTCCAGGAGCCCGACAGAGC
CTAAGTGA

Translation (445 aa):
MAELKYISGFGNECASEDPRCPGSLPKGQNNPQVCPYNLYAEQLSGSAFTCPRNTNKRSWLYRILPSVSH
KPFESIDQGHVTHNWDEVGPDPNQLRWKPFEIPKASEKKVDFVSGLYTLCGAGDIKSNNGLAVHIFLCNS
SMENRCFYNSDGDFLIVPQKGKLLIYTEFGKMSLQPNEICVIQRGMRFSVDVFEETRGYILEVYGVHFEL
PDLGPIGANGLANPRDFLIPVAWYEDRRVPGGYTVINKFQGKLFACKQDVSPFNVVAWHGNYTPYKYNLE
NFMVINAVAFDHADPSIFTVLTAKSLRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIKGHY
EAKQGGFLPGGGSLHSAMTPHGPDADCFEKASKAKLEPERIADGTMAFMFESSLSLAVTKWGLKTCSCLD
ENYYKCWEPLRSHFTPNSRSPTEPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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