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Report for CCDS40766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40766.1 Public Mus musculus 9 Mst1 23 108 98 CCDS HistoryNCBI Gene:15235Re-query CCDS DB by CCDS ID:40766.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035211.13 ENSMUSP00000035211.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035211.13Link to Ensembl Protein Viewer:ENSMUSP00000035211.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035211Re-query CCDS DB by Protein ID:ENSMUSP00000035211
Original member Current member NCBI NM_008243.3 NP_032269.3 Accepted alive Link to Nucleotide Sequence:NM_008243.3Link to Protein Sequence:NP_032269.3Re-query CCDS DB by Nucleotide ID:NM_008243Re-query CCDS DB by Protein ID:NP_032269Link to BLAST:NP_032269.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032269.3 716 P26928 716 100% 0 0

Chromosomal Locations for CCDS 40766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108080479 108080530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108081145 108081292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108081385 108081497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108081584 108081698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108081783 108081919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108082001 108082121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108082203 108082321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108082465 108082660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108082820 108082950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108083029 108083131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108083254 108083390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108083479 108083514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108083594 108083702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108083864 108083941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108084061 108084207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108084288 108084394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108084493 108084632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108084774 108084935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGGGTGGCTCCCACTTCTGCTGCTTCTGGTACAGTGTTCAAGGGCTCTTGGGCAGCGCTCACCACTGA
ATGACTTCCAGCTGTTCCGGGGCACAGAGTTAAGGAACCTGTTACACACAGCGGTGCCGGGGCCATGGCA
GGAGGATGTGGCAGATGCTGAGGAGTGTGCTAGGCGCTGTGGGCCCCTTCTGGACTGTCGGGCCTTCCAC
TACAACATGAGCAGCCATGGTTGCCAGCTGCTGCCGTGGACCCAGCACTCGCTGCACACACAGCTATACC
ACTCGAGTCTGTGCCATCTCTTCCAGAAGAAAGATTATGTGCGGACCTGCATTATGGACAATGGGGTCAG
CTACCGGGGCACTGTGGCCAGGACAGCTGGTGGCCTGCCCTGCCAAGCCTGGAGTCGCAGGTTCCCCAAT
GACCACAAGTATACGCCCACGCCAAAGAATGGCCTGGAAGAGAACTTCTGTAGGAACCCTGATGGGGATC
CCAGAGGTCCCTGGTGCTACACAACAAACCGCAGTGTGCGTTTCCAGAGCTGTGGCATCAAAACCTGCAG
GGAGGCTGTTTGTGTTCTGTGCAACGGTGAGGATTACCGTGGCGAGGTAGACGTTACAGAGTCAGGGCGG
GAGTGTCAACGCTGGGACCTGCAGCACCCCCACTCGCACCCTTTCCAGCCTGAAAAGTTCCTAGACAAAG
ATCTGAAAGACAACTATTGTCGTAATCCGGACGGATCTGAGCGGCCCTGGTGCTACACCACAGACCCGAA
TGTTGAGCGAGAATTCTGCGACCTGCCCAGTTGCGGGCCTAACCTGCCTCCGACCGTCAAAGGATCCAAG
TCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAA
CCAATACCACCTCTGCGGGCGTGCCCTGCCAGCGGTGGGATGCGCAGAGTCCACACCAGCACCGCTTTGT
GCCAGAGAAATATGCTTGCAAGGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCT
TGGTGCTTCACATCTCGACCTGGTTTGCGCATGGCCTTCTGCCACCAGATCCCACGCTGCACTGAAGAAC
TGGTGCCAGAGGGATGCTACCACGGCTCAGGTGAACAGTATCGTGGCTCAGTCAGCAAGACGCGCAAGGG
CGTTCAGTGCCAGCACTGGTCCTCTGAGACACCGCACAAGCCACAATTTACACCCACCTCGGCACCGCAG
GCGGGACTGGAGGCCAACTTCTGCAGGAATCCTGATGGGGATAGCCATGGGCCCTGGTGCTATACCTTGG
ACCCGGATATCCTGTTTGACTACTGTGCCCTACAGCGCTGTGATGATGACCAGCCACCATCCATTCTGGA
CCCCCCAGACCAGGTGGTGTTTGAAAAGTGTGGCAAGAGAGTTGACAAGAGTAATAAACTTCGTGTGGTG
GGAGGCCATCCTGGGAACTCCCCATGGACGGTCAGCTTGCGGAATCGACAGGGCCAGCATTTCTGTGGGG
GCTCCCTAGTGAAGGAGCAGTGGGTACTGACTGCCCGGCAATGCATCTGGTCATGCCACGAACCTCTCAC
AGGATACGAGGTATGGTTGGGTACAATTAACCAGAACCCACAGCCTGGAGAGGCAAACCTGCAGAGGGTC
CCAGTGGCCAAGGCAGTGTGCGGCCCTGCAGGCTCCCAGCTTGTTCTGCTCAAGCTGGAGAGACCTGTGA
TCCTGAACCATCACGTGGCCCTGATTTGCCTGCCTCCTGAACAGTATGTGGTACCTCCAGGGACCAAGTG
TGAGATCGCAGGCTGGGGTGAATCCATCGGTACAAGCAATAACACAGTCCTTCATGTGGCCTCGATGAAT
GTCATCTCCAACCAGGAATGTAACACGAAGTACCGAGGACACATACAAGAGAGTGAGATATGCACCCAGG
GACTGGTGGTCCCTGTGGGGGCTTGTGAGGGTGACTACGGGGGCCCACTTGCCTGCTATACCCATGACTG
CTGGGTCCTACAGGGACTTATCATCCCGAACAGAGTGTGTGCACGGCCCCGCTGGCCAGCTATCTTCACA
CGGGTGTCTGTGTTCGTGGACTGGATTAACAAGGTCATGCAGCTGGAGTAG

Translation (716 aa):
MGWLPLLLLLVQCSRALGQRSPLNDFQLFRGTELRNLLHTAVPGPWQEDVADAEECARRCGPLLDCRAFH
YNMSSHGCQLLPWTQHSLHTQLYHSSLCHLFQKKDYVRTCIMDNGVSYRGTVARTAGGLPCQAWSRRFPN
DHKYTPTPKNGLEENFCRNPDGDPRGPWCYTTNRSVRFQSCGIKTCREAVCVLCNGEDYRGEVDVTESGR
ECQRWDLQHPHSHPFQPEKFLDKDLKDNYCRNPDGSERPWCYTTDPNVEREFCDLPSCGPNLPPTVKGSK
SQRRNKGKALNCFRGKGEDYRGTTNTTSAGVPCQRWDAQSPHQHRFVPEKYACKDLRENFCRNPDGSEAP
WCFTSRPGLRMAFCHQIPRCTEELVPEGCYHGSGEQYRGSVSKTRKGVQCQHWSSETPHKPQFTPTSAPQ
AGLEANFCRNPDGDSHGPWCYTLDPDILFDYCALQRCDDDQPPSILDPPDQVVFEKCGKRVDKSNKLRVV
GGHPGNSPWTVSLRNRQGQHFCGGSLVKEQWVLTARQCIWSCHEPLTGYEVWLGTINQNPQPGEANLQRV
PVAKAVCGPAGSQLVLLKLERPVILNHHVALICLPPEQYVVPPGTKCEIAGWGESIGTSNNTVLHVASMN
VISNQECNTKYRGHIQESEICTQGLVVPVGACEGDYGGPLACYTHDCWVLQGLIIPNRVCARPRWPAIFT
RVSVFVDWINKVMQLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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