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Report for CCDS19883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19883.1 Public Mus musculus 5 Hmgb1 23 108 98 CCDS HistoryNCBI Gene:15289Re-query CCDS DB by CCDS ID:19883.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085546.12 ENSMUSP00000082682.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085546.12Link to Ensembl Protein Viewer:ENSMUSP00000082682.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000085546Re-query CCDS DB by Protein ID:ENSMUSP00000082682
Original member Current member EBI ENSMUST00000093196.10 ENSMUSP00000106131.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093196.10Link to Ensembl Protein Viewer:ENSMUSP00000106131.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000093196Re-query CCDS DB by Protein ID:ENSMUSP00000106131
Original member Current member EBI ENSMUST00000110505.7 ENSMUSP00000106132.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110505.7Link to Ensembl Protein Viewer:ENSMUSP00000106132.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110505Re-query CCDS DB by Protein ID:ENSMUSP00000106132
Original member Current member NCBI NM_001313894.1 NP_001300823.1 Accepted alive Link to Nucleotide Sequence:NM_001313894.1Link to Protein Sequence:NP_001300823.1Re-query CCDS DB by Nucleotide ID:NM_001313894Re-query CCDS DB by Protein ID:NP_001300823Link to BLAST:NP_001300823.1
Original member Current member NCBI NM_010439.4 NP_034569.1 Accepted alive Link to Nucleotide Sequence:NM_010439.4Link to Protein Sequence:NP_034569.1Re-query CCDS DB by Nucleotide ID:NM_010439Re-query CCDS DB by Protein ID:NP_034569Link to BLAST:NP_034569.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300823.1 215 P63158 215 100% 0 0
NP_034569.1 215 P63158 215 100% 0 0

Chromosomal Locations for CCDS 19883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149048737 149048913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149049727 149049901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149050295 149050440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149050588 149050737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGGCAAAGGAGATCCTAAAAAGCCGAGAGGCAAAATGTCCTCATATGCATTCTTTGTGCAAACTTGCC
GGGAGGAGCACAAGAAGAAGCACCCGGATGCTTCTGTCAACTTCTCAGAGTTCTCCAAGAAGTGCTCAGA
GAGGTGGAAGACCATGTCTGCTAAAGAAAAGGGGAAATTTGAAGATATGGCAAAGGCTGACAAGGCTCGT
TATGAAAGAGAAATGAAAACCTACATCCCCCCCAAAGGGGAGACCAAAAAGAAGTTCAAGGACCCCAATG
CACCCAAGAGGCCTCCTTCGGCCTTCTTCTTGTTCTGTTCTGAGTACCGCCCCAAAATCAAAGGCGAGCA
TCCTGGCTTATCCATTGGTGATGTTGCAAAGAAACTAGGAGAGATGTGGAACAACACTGCAGCAGATGAC
AAGCAGCCCTATGAGAAGAAAGCTGCCAAGCTGAAGGAGAAGTATGAGAAGGATATTGCTGCCTACAGAG
CTAAAGGAAAACCTGATGCAGCGAAAAAGGGGGTGGTCAAGGCTGAAAAGAGCAAGAAAAAGAAGGAAGA
GGAAGATGATGAGGAGGATGAAGAGGATGAGGAAGAGGAGGAAGAAGAGGAAGACGAAGATGAAGAAGAA
GATGATGATGATGAATAA

Translation (215 aa):
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR
YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD
KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEEDEDEEE
DDDDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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