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Report for CCDS31376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31376.1 Public Homo sapiens 11 HBD 24 110 108 CCDS HistoryNCBI Gene:3045Re-query CCDS DB by CCDS ID:31376.1Re-query CCDS DB by GeneID:3045See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31376.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000643122.1 ENSP00000494708.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643122.1Link to Ensembl Protein Viewer:ENSP00000494708.1Re-query CCDS DB by Nucleotide ID:ENST00000643122Re-query CCDS DB by Protein ID:ENSP00000494708
Original member Current member EBI ENST00000650601.1 ENSP00000497529.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000650601.1Link to Ensembl Protein Viewer:ENSP00000497529.1Re-query CCDS DB by Nucleotide ID:ENST00000650601Re-query CCDS DB by Protein ID:ENSP00000497529
Original member Current member NCBI NM_000519.4 NP_000510.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000519.4Link to Protein Sequence:NP_000510.1Re-query CCDS DB by Nucleotide ID:NM_000519Re-query CCDS DB by Protein ID:NP_000510Link to BLAST:NP_000510.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000510.1 147 P02042 147 100% 0 0

Chromosomal Locations for CCDS 31376.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5232964 5233092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5233991 5234213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5234342 5234433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGTGCATCTGACTCCTGAGGAGAAGACTGCTGTCAATGCCCTGTGGGGCAAAGTGAACGTGGATGCAG
TTGGTGGTGAGGCCCTGGGCAGATTACTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGG
GGATCTGTCCTCTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAGGTGCTAGGT
GCCTTTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACTTTTTCTCAGCTGAGTGAGCTGCACT
GTGACAAGCTGCACGTGGATCCTGAGAACTTCAGGCTCTTGGGCAATGTGCTGGTGTGTGTGCTGGCCCG
CAACTTTGGCAAGGAATTCACCCCACAAATGCAGGCTGCCTATCAGAAGGTGGTGGCTGGTGTGGCTAAT
GCCCTGGCTCACAAGTACCATTGA

Translation (147 aa):
MVHLTPEEKTAVNALWGKVNVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPKVKAHGKKVLG
AFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFGKEFTPQMQAAYQKVVAGVAN
ALAHKYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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