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Report for CCDS49912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49912.1 Public Mus musculus 16 Dnajc28 23 108 98 CCDS HistoryNCBI Gene:246738Re-query CCDS DB by CCDS ID:49912.1Re-query CCDS DB by GeneID:246738See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49912.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169982.1 ENSMUSP00000132288.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169982.1Link to Ensembl Protein Viewer:ENSMUSP00000132288.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169982Re-query CCDS DB by Protein ID:ENSMUSP00000132288
Original member Current member NCBI NM_001099738.1 NP_001093208.1 Accepted alive Link to Nucleotide Sequence:NM_001099738.1Link to Protein Sequence:NP_001093208.1Re-query CCDS DB by Nucleotide ID:NM_001099738Re-query CCDS DB by Protein ID:NP_001093208Link to BLAST:NP_001093208.1

Chromosomal Locations for CCDS 49912.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 91616197 91617379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91618588 91618634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGACTTCTAAAACGCACCTTACATTCAAAGGATCAGTAATCCTCCAATCACTGTTAAGAATTCCAGATA
CAATGATAAACACAGTGTGCATGAAGACCACTCGGATCTTGAGACTGCACCTAACAAACGCTTCCTTGAT
TCCTCCTGGTATAAAAATGCTTTCAGACCCCAGATCCAGGATGATATCAACCCATGAATCCCAGAAGCTG
AGAGAATATTACAGGCTGCTGAATCTGGATGAAGGATGCTCTGTAGACGACGTCAGGGAGTCTTTTCACA
AGCTCGCCAGGCAGTACCACCCAGACAGCGGTTCTAGTGATGCTGACTCTGCAACATTTATAAAGATTGA
AGAGGCTTACAGGAATGTGCTGTCCCATGCGATAAAACGGATGCATGCCGGACAGGATAAAGCTGAAGAT
GCAGCAGAAGATGAAGAAGAAGGAAAGTTCAAATACAACACACCTCAGCACCGACATTACTTAAGCTTCG
AAGGTGTCGGCTTTGGGACCCCCAGCCAGCGAGAGAAACAATACAGGCAGTTCAGGGCGGATCGCGCGAC
GGAGCAGGTGATGGAATACCAAAGGCAGAAGCTTCAGAGGGAGTTCTTCGCCAACAGCATAACTGTCAAG
GACGTACGGCAGAGCAAGCAACAGAAGATAACTCAAGCCATCGAGCGCCTGGTGGAGGACCTCATTCAGG
AATCCATGGCAAAAGGAGACTTTGACAATCTCAGCGGGAAAGGAAAACCGCTGAAGAAATTTTCTGGCTG
CTCATATATTGATCCCATGACTCACAACCTGAACCGAATATTGATAGATAATGGATACCAACCAGAGTGG
ATCCTGATGCAGAAGGAGATTAAGGACACCATCGAGCAACTCCGAGAAGCGCTTTTAATGTCTAGGAAGA
AGCTGGGGAACCCTCTGTCACCCACAGAGCAGAAACAGTGGGCCCAAGTGTGTGAGCAGTTTCAAGAAAA
GATACGAAAGCTGAACAAGCGAATTAATGATTTCAACTTAATTGTTCCCATCCTGACCAGGCAGAAAGTC
CATTTTGACGCACAGAAAGAAATTATCAGAGTCCAAGAAATGTACGGGGCCTTCGTAGAAGCAAACGAAG
TCACAGAAGAAAACCAAACTGACGTTAGCCAGGGAGAAGAATCAAAAACACCCAGAGTCAAGGCAGGCTT
TCTAAACTGGCTAAATCTGTGGAAATCTATTAAAATATGA

Translation (409 aa):
MTSKTHLTFKGSVILQSLLRIPDTMINTVCMKTTRILRLHLTNASLIPPGIKMLSDPRSRMISTHESQKL
REYYRLLNLDEGCSVDDVRESFHKLARQYHPDSGSSDADSATFIKIEEAYRNVLSHAIKRMHAGQDKAED
AAEDEEEGKFKYNTPQHRHYLSFEGVGFGTPSQREKQYRQFRADRATEQVMEYQRQKLQREFFANSITVK
DVRQSKQQKITQAIERLVEDLIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEW
ILMQKEIKDTIEQLREALLMSRKKLGNPLSPTEQKQWAQVCEQFQEKIRKLNKRINDFNLIVPILTRQKV
HFDAQKEIIRVQEMYGAFVEANEVTEENQTDVSQGEESKTPRVKAGFLNWLNLWKSIKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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