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Report for CCDS27924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27924.1 Public Mus musculus 16 Hmox2 23 108 98 CCDS HistoryNCBI Gene:15369Re-query CCDS DB by CCDS ID:27924.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27924.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004172.14 ENSMUSP00000004172.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004172.14Link to Ensembl Protein Viewer:ENSMUSP00000004172.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000004172Re-query CCDS DB by Protein ID:ENSMUSP00000004172
Original member Current member EBI ENSMUST00000120232.7 ENSMUSP00000112397.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120232.7Link to Ensembl Protein Viewer:ENSMUSP00000112397.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120232Re-query CCDS DB by Protein ID:ENSMUSP00000112397
Original member Current member EBI ENSMUST00000118885.7 ENSMUSP00000113110.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118885.7Link to Ensembl Protein Viewer:ENSMUSP00000113110.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118885Re-query CCDS DB by Protein ID:ENSMUSP00000113110
Original member Current member NCBI NM_001136066.2 NP_001129538.1 Accepted alive Link to Nucleotide Sequence:NM_001136066.2Link to Protein Sequence:NP_001129538.1Re-query CCDS DB by Nucleotide ID:NM_001136066Re-query CCDS DB by Protein ID:NP_001129538Link to BLAST:NP_001129538.1
Original member Current member NCBI NM_010443.2 NP_034573.2 Accepted alive Link to Nucleotide Sequence:NM_010443.2Link to Protein Sequence:NP_034573.2Re-query CCDS DB by Nucleotide ID:NM_010443Re-query CCDS DB by Protein ID:NP_034573Link to BLAST:NP_034573.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129538.1 315 O70252 315 100% 0 0
NP_034573.2 315 O70252 315 100% 0 0

Chromosomal Locations for CCDS 27924.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4762595 4762677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4763729 4763846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4764606 4765097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4765763 4765889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4765978 4766105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGTCTTCAGAGGTGGAGACCTCGGAGGGGGTAGATGAGTCAGAGAAGAACTCTATGGCACCAGAAAAGG
AAAACCATACCAAAATGGCAGACCTTTCTGAGCTCCTGAAGGAAGGGACCAAGGAAGCACATGACCGAGC
AGAAAATACCCAGTTTGTCAAAGACTTCTTGAAAGGAAACATTAAGAAGGAGCTATTTAAGCTGGCCACC
ACTGCACTTTACTTCACATACTCAGCCCTTGAGGAGGAAATGGACCGCAACAAGGACCACCCAGCCTTCG
CCCCCTTATATTTCCCCACGGAGCTACACCGGAAGGCAGCACTGATCAAGGACATGAAGTATTTCTTTGG
TGAAAACTGGGAGGAGCAGGTGAAGTGCTCTGAGGCTGCCCAGAAGTATGTGGATCGGATTCACTATGTA
GGGCAAAATGAGCCAGAGCTGCTGGTGGCCCATGCTTATACTCGTTACATGGGGGACCTTTCAGGAGGCC
AGGTACTGAAGAAGGTTGCCCAGAGGGCACTAAAACTTCCCAGCACTGGGGAAGGGACCCAATTCTACCT
GTTTGAGCATGTGGACAATGCCCAGCAATTCAAGCAGTTCTACCGCGCTAGAATGAATGCCTTGGACCTG
AATTTGAAGACCAAAGAGAGGATTGTGGAGGAGGCCAATAAAGCCTTTGAATATAACATGCAGATATTCA
GTGAACTGGACCAGGCTGGCTCCATGCTAGCAAGAGAAACCCTGGAGGATGGGCTCCCGGTACATGATGG
GAAGGGAGATATACGTAAATGCCCCTTTTATGCTGCTCAGCCAGACAAAGGTACACTAGGAGGCAGCAAC
TGCCCCTTCCAGACAACCGTGGCTGTGCTGAGGAAGCCTAGCCTGCAGCTCATTCTGGCTGCCAGTGTGG
CCTTGGTAGCTGGACTCTTGGCCTGGTACTACATGTGA

Translation (315 aa):
MSSEVETSEGVDESEKNSMAPEKENHTKMADLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLAT
TALYFTYSALEEEMDRNKDHPAFAPLYFPTELHRKAALIKDMKYFFGENWEEQVKCSEAAQKYVDRIHYV
GQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFEHVDNAQQFKQFYRARMNALDL
NLKTKERIVEEANKAFEYNMQIFSELDQAGSMLARETLEDGLPVHDGKGDIRKCPFYAAQPDKGTLGGSN
CPFQTTVAVLRKPSLQLILAASVALVAGLLAWYYM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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