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Report for CCDS19228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19228.1 Public Mus musculus 5 Hmx1 23 108 98 CCDS HistoryNCBI Gene:15371Re-query CCDS DB by CCDS ID:19228.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087674.5 ENSMUSP00000084958.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087674.5Link to Ensembl Protein Viewer:ENSMUSP00000084958.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000087674Re-query CCDS DB by Protein ID:ENSMUSP00000084958
Original member Current member NCBI NM_010445.4 NP_034575.1 Accepted alive Link to Nucleotide Sequence:NM_010445.4Link to Protein Sequence:NP_034575.1Re-query CCDS DB by Nucleotide ID:NM_010445Re-query CCDS DB by Protein ID:NP_034575Link to BLAST:NP_034575.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034575.1 332 O70218 332 100% 0 0

Chromosomal Locations for CCDS 19228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35389117 35389489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35391738 35392363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGCCGGATGAGCTGACCGAGCCCGGGCGCGCCACACCAGCTCGCGCCTCCTCCTTCCTCATCGAGAACC
TGCTAGCAGCCGAGGCCAAGGGCGCGGGGCGCTCAACCCAGGGCGATGGCGTCCGCGAGGAAGAGGAAGA
GGACGACGACGACCCCGAGGACGAGGATCCGGAGCAGGCGCGACGACGACTACAGCGGCGGCGACAGCAG
CGCGCGGGCAGCGGGCCGGGCGGGGAGGCGAGGGCCCGGGCACTGGGCCTAGGGCCCCGGCCGCCTCCTG
GGCCCGGCCCGCCCTTCGCGCTCGGCTGCGGAGGTACAACGCGGTGGTACCCACGGGTGCACGGCGGCTA
CGGAGGTGGTCTAAGTCCTGACACAAGCGACCGGGACTCTCCGGAGACCGGCGAGGAGATGGGCCGCGCA
GAGAGCGCCTGGCCGCGGTGCCCCGGGCCGGGAACCGTTCCGCGGGAGGTGACGACGCAGGGCCCGGCGA
CCGGCGGGGAGGAGGCGGCGGAGTTGGCCGAGGCTCCAGCGGTGGCGGCGGCGGCGACAGGGGAGGCGCG
CGGTGGCCGCAGGAAGAAGACGCGCACGGTCTTCTCGCGCAGCCAGGTCTTCCAGCTCGAGTCCACTTTC
GATCTGAAGCGCTACCTGAGCAGCGCAGAGCGCGCGGGCCTCGCCGCCTCGCTGCAGCTCACGGAGACGC
AGGTCAAGATCTGGTTTCAGAACCGCCGCAACAAGTGGAAGCGGCAGCTGGCAGCGGAGCTGGAGGCGGC
CAGCCTGTCCCCGCCGGGTGCGCAGCGCCTGGTCCGCGTGCCGGTGCTCTACCACGAGAGTCCCCCGGCC
GCCGCGGGGCCCGCGCTGCCTTTCCCGCTGGCGCCGCCCGCACCCGCACCGCCGCCGCCGCTGCTTGGTT
TCTCGGGCGCGCTTGCTTACCCGCTTGCCGCCTTCCCTGCCGCCGCCTCGGTGCCCTTCCTTCGCGCGCA
GATGCCGGGGCTAGTGTGA

Translation (332 aa):
MPDELTEPGRATPARASSFLIENLLAAEAKGAGRSTQGDGVREEEEEDDDDPEDEDPEQARRRLQRRRQQ
RAGSGPGGEARARALGLGPRPPPGPGPPFALGCGGTTRWYPRVHGGYGGGLSPDTSDRDSPETGEEMGRA
ESAWPRCPGPGTVPREVTTQGPATGGEEAAELAEAPAVAAAATGEARGGRRKKTRTVFSRSQVFQLESTF
DLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPA
AAGPALPFPLAPPAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPGLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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