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Report for CCDS23218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23218.1 Public Mus musculus 9 Trcg1 23 108 98 CCDS HistoryNCBI Gene:541610Re-query CCDS DB by CCDS ID:23218.1Re-query CCDS DB by GeneID:541610See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093837.4 ENSMUSP00000091357.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093837.4Link to Ensembl Protein Viewer:ENSMUSP00000091357.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093837Re-query CCDS DB by Protein ID:ENSMUSP00000091357
Original member Current member NCBI NM_001014398.2 NP_001014420.2 Accepted alive Link to Nucleotide Sequence:NM_001014398.2Link to Protein Sequence:NP_001014420.2Re-query CCDS DB by Nucleotide ID:NM_001014398Re-query CCDS DB by Protein ID:NP_001014420Link to BLAST:NP_001014420.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014420.2 825 Q58Y74-1 825 99.6364% 0 3

Chromosomal Locations for CCDS 23218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57240363 57240405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57241190 57242604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57244141 57244202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57245442 57245593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57245748 57245878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57246242 57246306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57246616 57246755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57247885 57248009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57248104 57248162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57248258 57248403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57248621 57248703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57249728 57249784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2478 nt):
ATGGACAAGCAGTGGTTTCCTGCAGCTGGAATTCTCTTGGCTGCCCTCCTAGTAGTCTCTGCTTCTACCC
TGACCCTTCTCTCTACTAATGAAGACCCTGAGCAGTTTCCCTCAGCCCCTGGCACATCAGCTCAGCAAAG
TAGCCGCATTCTACTGGGCATCCTGACAGACGTCACTGGTGGTATCAACTCAGTTGAGAGGGAACCGGAG
GCCCTGGGGAGGAGGGCAGGAGGCCTCTCTACAGAAGGAGCTGGGGGTCAGGAGTCTCCCTCAATGCCTG
GCCCCTCAGGCAGGGTCATACCTGAACCAATTCCCTCAGCCCTGACCACATCTGCATCCGACATGGCCTC
TCAGCCAGTGTCCTCTGGGGCTGACCCTATAGAGGAAATCATGGCTCTTGGAACTCTAGAGACAATTACG
ATGTCATCACCACAGCCTTCTCCCAGACATGAATCTGAGCAGAAGTTCGACAAGGTCTTCAGGTTGTGCG
GGACAGTTCCTGCCTCTGAAACACTGGAGAAAAATGTTGCATCTAAACCAGCTTGGCATTTAATTAAAGC
TCCCCCTCCCCCCATATTCTCTAGATCTCCACACCTGTTATGGTGTACCCCCAATTCCACTGTCTACATA
CCAGTGCCTGCATGGAGGGATGGCCACTCCAGGCCAGAGGCATCCTCATCTGTGCCACTAGCTCCAAGTA
CCTCCTTAGGACTGCCTATCTTTCCATGGATGCCTAACATACTGAAAGCTACAGAGTCCCTGTTGCCTGC
ATCTCCTGGAAGATCAGGGCTGGACCTCACCTCCCAAGTGGGCTCCAGAGCATCTGAAAACACCGTGGCT
TTGGACACAGGCCCAGTATCCCGTGGTACTTCTGTGCTGCTGTTGCCCTCAGCAACATCCCCTTCACAGG
CATCCTCCCTCCACTCCCCTCGCCCCTCATCAGCATCACCCCTGTCTGCATCCCCATCACCTGCAGCTTT
GTCCTTCTTCCCATCACCAGCCTCAATCCTGGTCCCGGTTTCCTCTGTCACCACAGGAGCCAGTGACTCT
CCTAAAGCTCCTGTGTCTGTCATTGCACCCTCAACTACAGACTCTTTCATTAAAACCTCAAACCTCGGAC
CCCAGATAGCTCTACAACCTAGTCACCCTGGGCTATGGCTTCCCACCAGCCCAATCCACATGCCCACGCT
CTCCCTCCAACATTTCTCTAGCCCTCCCTCTACCGCACATAGCTCTGGCTTCACAGAGTCATCTGTACAT
GCTGATCCTACCCTGGCCTCTACCCTCCCTCACCCTGGCCAGGATATGTCTTTGCAGGACTTGAGTTTCT
CCACTGGAGGACGTAGTCATACGACCCACTCTGTGACCTTTAGGATCAACAGCAATCGCTTCACAAAAGC
TGTCTGGAACCTGGTACCCTTGGAGCGCTGGCTGCTGAACAGGCTTATCTGCTACCAGCTCCGGTTCATC
TACCAGGAGGCCTTCCCCAACTTCAGGAATGTCAGCGCCCTGCTGTTTCGGCCTGGCTGTCCAGAGGTGA
AAGCCTCCCTCATTTTTGGTCCTCCGGATCCCTCGTCCATAGAAATCCTCTGGACTTTGTACCGCAAAGT
GAAGTCCTCCAGATGGTCGCTTGGGTACCTGTCCCTGGCCGACCATGGCCTTTCCTCTGATGGGTACAGC
ATGACTGACCTTACCCAGGAAATCATCAACATTAGCTTCACACTCATGAGGCCCTTCCTGCCCCAGCTGC
TTCTGCCTAGTTCTCAGTCTTGTATCCTGCTGGAAAAGCAGACCATCCAGCTGGTCACCCACGAAGTGTC
AAGATTCTACAAGGCTGAGCTCCAGAGCCAGCCCCTGCTCCTATTCAGCAACGTGAAGGAGTGGGTGAGC
GTTTACATGGAATACAAATTCAAGAGCCCCATCCCCATCCGTCTCCAAGGCCTGGCCAGTCACCTGGCCC
ATCATATAACAGATCCCACCCTTCAGAAATCCAGCATAATGGCCAATGGGGAGAAAGCAGATCTGGTGTT
TTATGAGATGTGGCTCTTGATCCTGGGTCACCCCTTCACCAAGACCTTGGAGAACAAGACTAGTTCTGAG
TGCCAGGAGCTTCGTGGACTGCTGACGAGACAGCTAACCTCAGTCCTCCAGCCTTTGAAGAACTTTGGTC
AAGTGGTGGTGGAGGAATTCCACCAGGAACCACTGACTGCCAGGGTACAAACGGCCTTCTTTGGGGCTGT
GCCAGCCCAGGCCATCATTCAAGACACCGTGCTCCAAGCCCTGGGCTCCCTGCAGGAAACTGAGGGTCTG
CAGTTAGAGATGCTCCTCCCAGTCCTTGGCACCCCCAGCTCCAGAGCCTCGAGAGGCCCCAGGGGCGGGG
CCATGCTGAACCTCCAGCGCTTCACTTCTCTCTTTGTCCTGGTGGCTCTTTGTACGGCTCCTCCCTTCAT
CAATAAGCAAGCCCTATACCTCTCCTAG

Translation (825 aa):
MDKQWFPAAGILLAALLVVSASTLTLLSTNEDPEQFPSAPGTSAQQSSRILLGILTDVTGGINSVEREPE
ALGRRAGGLSTEGAGGQESPSMPGPSGRVIPEPIPSALTTSASDMASQPVSSGADPIEEIMALGTLETIT
MSSPQPSPRHESEQKFDKVFRLCGTVPASETLEKNVASKPAWHLIKAPPPPIFSRSPHLLWCTPNSTVYI
PVPAWRDGHSRPEASSSVPLAPSTSLGLPIFPWMPNILKATESLLPASPGRSGLDLTSQVGSRASENTVA
LDTGPVSRGTSVLLLPSATSPSQASSLHSPRPSSASPLSASPSPAALSFFPSPASILVPVSSVTTGASDS
PKAPVSVIAPSTTDSFIKTSNLGPQIALQPSHPGLWLPTSPIHMPTLSLQHFSSPPSTAHSSGFTESSVH
ADPTLASTLPHPGQDMSLQDLSFSTGGRSHTTHSVTFRINSNRFTKAVWNLVPLERWLLNRLICYQLRFI
YQEAFPNFRNVSALLFRPGCPEVKASLIFGPPDPSSIEILWTLYRKVKSSRWSLGYLSLADHGLSSDGYS
MTDLTQEIINISFTLMRPFLPQLLLPSSQSCILLEKQTIQLVTHEVSRFYKAELQSQPLLLFSNVKEWVS
VYMEYKFKSPIPIRLQGLASHLAHHITDPTLQKSSIMANGEKADLVFYEMWLLILGHPFTKTLENKTSSE
CQELRGLLTRQLTSVLQPLKNFGQVVVEEFHQEPLTARVQTAFFGAVPAQAIIQDTVLQALGSLQETEGL
QLEMLLPVLGTPSSRASRGPRGGAMLNLQRFTSLFVLVALCTAPPFINKQALYLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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