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Report for CCDS14848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14848.1 Public Mus musculus 1 Khdc1a 23 108 98 CCDS HistoryNCBI Gene:368204Re-query CCDS DB by CCDS ID:14848.1Re-query CCDS DB by GeneID:368204See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088407.3 ENSMUSP00000085749.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088407.3Link to Ensembl Protein Viewer:ENSMUSP00000085749.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088407Re-query CCDS DB by Protein ID:ENSMUSP00000085749
Original member Current member NCBI NM_183322.2 NP_899145.2 Accepted alive Link to Nucleotide Sequence:NM_183322.2Link to Protein Sequence:NP_899145.2Re-query CCDS DB by Nucleotide ID:NM_183322Re-query CCDS DB by Protein ID:NP_899145Link to BLAST:NP_899145.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899145.2 166 Q3UWR2 166 100% 0 0

Chromosomal Locations for CCDS 14848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 21350020 21350119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21350258 21350440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21350876 21351093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGAGTGACCTCCGCAGGAAGGGATGGTGGAATGTGCCTGACTACTTCCACAGCCCACTGGTGTTTGACA
TGGAAGAGGACAAGGAAGACTACATATTTGGCCCTCATGATGAATACCTTCACACCCTGGAGGTCCACAG
CAACACCCTCATCCAGCTGGAAAGATGGTTCACACCCACAGGCCAAACCCGAGTCACTGTGGTGGGGCCA
CTTAAGGCAAGGCTGTGGGTGATGGACATGATCAGAAAAGTGGGGAGTAAGAACAATTTGGATCAAATTA
AAGGCAAGATGATGCTACTGCAGATCCGGGATCATCCTCTGAGGGATCGAGACCTGGAGCTTCATCCGGA
ATCAGGGAGCAGTCTTTGGATTACCACAATGAATGATACGACTTTTGTGGAAGTTCCTCACTTCTTGAGG
TTTCCTTTGACAGTTGCTTGGTTGTTTTGTGGTTTTGTGAGAATTCTTGGTATTCATAACTTCGCAGACC
TCCATTGGTAA

Translation (166 aa):
MSDLRRKGWWNVPDYFHSPLVFDMEEDKEDYIFGPHDEYLHTLEVHSNTLIQLERWFTPTGQTRVTVVGP
LKARLWVMDMIRKVGSKNNLDQIKGKMMLLQIRDHPLRDRDLELHPESGSSLWITTMNDTTFVEVPHFLR
FPLTVAWLFCGFVRILGIHNFADLHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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