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Report for CCDS25299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25299.1 Public Mus musculus 11 Hoxb3 23 108 98 CCDS HistoryNCBI Gene:15410Re-query CCDS DB by CCDS ID:25299.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25299.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055334.2 ENSMUSP00000053426.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055334.2Link to Ensembl Protein Viewer:ENSMUSP00000053426.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000055334Re-query CCDS DB by Protein ID:ENSMUSP00000053426
Original member Current member EBI ENSMUST00000093944.9 ENSMUSP00000091476.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093944.9Link to Ensembl Protein Viewer:ENSMUSP00000091476.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093944Re-query CCDS DB by Protein ID:ENSMUSP00000091476
Original member Current member NCBI NM_001079869.1 NP_001073338.1 Accepted alive Link to Nucleotide Sequence:NM_001079869.1Link to Protein Sequence:NP_001073338.1Re-query CCDS DB by Nucleotide ID:NM_001079869Re-query CCDS DB by Protein ID:NP_001073338Link to BLAST:NP_001073338.1
Original member Current member NCBI NM_010458.2 NP_034588.2 Accepted alive Link to Nucleotide Sequence:NM_010458.2Link to Protein Sequence:NP_034588.2Re-query CCDS DB by Nucleotide ID:NM_010458Re-query CCDS DB by Protein ID:NP_034588Link to BLAST:NP_034588.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073338.1 433 P09026 433 100% 0 0
NP_034588.2 433 P09026 433 100% 0 0

Chromosomal Locations for CCDS 25299.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96344249 96344696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96345546 96346399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGCAGAAAGCCACCTACTACGACAACACCGCAGCTGCGCTCTTCGGAGGCTACTCCTCGTACCCTGGCA
GCAATGGTTTCGGCTACGACGGGCCTCCCCAGCCCCCCTTTCAGGCCGCCACGCACCTGGAGGGTGACTA
CCAGCGCTCAGCGTGTTCTCTGCAGTCCCTGGGCAACGCCGCCCCACATGCCAAGAGCAAGGAGCTCAAT
GGCAGCTGCATGAGGCCAGGCCTGGCCCCAGAGCCCCTGCCCGCACCTCCGGGCTCACCCCCACCCAGCG
CCGCACCTACCAGTACCACTAGCAACAGCAATAACGGGGGTGGGCCCAGCAAAAGCGGCCCCCCCAAGTG
CGGTGCCGGCTCCAACTCCACCCTCACCAAACAGATATTCCCCTGGATGAAAGAGTCGAGGCAAACGTCC
AAGCTGAAAAACAGCTCCCCCGGCACAGCAGAAGGTTGTGGTGGTGGCGGCGGCGGTGGTGGCGGCGGCG
GCGGCGGTGGCGGCGGCAGCAGCGGCGGGGGCGGCGGCGGCGGCGGGGGAGGGGACAAGAGCCCCCCGGG
GTCGGCCGCGTCCAAGCGGGCGCGCACGGCGTACACAAGCGCGCAGCTGGTGGAGCTGGAGAAGGAGTTC
CACTTCAACCGTTATTTGTGCCGGCCGCGCCGGGTCGAGATGGCCAATCTGCTGAACCTCAGCGAGCGCC
AGATCAAGATCTGGTTCCAGAACCGTCGCATGAAGTACAAGAAAGACCAGAAGGCCAAGGGGCTGGCCTC
GTCCTCTGGGGGTCCCTCTCCGGCCGGAAGCCCCCCGCAGCCCATGCAGTCCACGGCCGGCTTCATGAAC
GCCTTACACTCCATGACCCCCAGCTACGACAGCCCGTCCCCACCAGCTTTCGGCAAAGGCCACCAGAATG
CCTACGCGCTGCCTTCCAACTACCAGCCCCCTCTTAAGGGTTGCGGCGCCCCACAGAAGTACCCCCCGAC
CCCGGCGTCGGAGTATGAGCCCCACGTCCTCCAAGCTAACGGGGGCGCCTACGGGACGCCCACCATGCAG
GGCAGTCCGGTGTATGTGGGCGGGGGTGGCTACGCGGATCCGCTGCCGCCCCCTGCCGGCCCCTCCCTCT
ACGGCCTCAATCACCTTTCCCACCACCCCTCGGGGAACCTGGACTACAACGGGGCGGCCCCTATGGGCCC
CAACCAGCATCATGGACCCTGTGACCCTCACCCCACGTACACAGACCTCTCCTCTCACCACGCACCGCCT
CAGGGTAGAATCCAAGAAGCGCCCAAACTGACACACCTGTGA

Translation (433 aa):
MQKATYYDNTAAALFGGYSSYPGSNGFGYDGPPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELN
GSCMRPGLAPEPLPAPPGSPPPSAAPTSTTSNSNNGGGPSKSGPPKCGAGSNSTLTKQIFPWMKESRQTS
KLKNSSPGTAEGCGGGGGGGGGGGGGGGGSSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEF
HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMN
ALHSMTPSYDSPSPPAFGKGHQNAYALPSNYQPPLKGCGAPQKYPPTPASEYEPHVLQANGGAYGTPTMQ
GSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAAPMGPNQHHGPCDPHPTYTDLSSHHAPP
QGRIQEAPKLTHL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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