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Report for CCDS36621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36621.1 Public Mus musculus 13 Carmil1 23 108 98 CCDS HistoryNCBI Gene:68732Re-query CCDS DB by CCDS ID:36621.1Re-query CCDS DB by GeneID:68732See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072889.11 ENSMUSP00000072662.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072889.11Link to Ensembl Protein Viewer:ENSMUSP00000072662.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072889Re-query CCDS DB by Protein ID:ENSMUSP00000072662
Original member Current member NCBI NM_026825.3 NP_081101.3 Accepted alive Link to Nucleotide Sequence:NM_026825.3Link to Protein Sequence:NP_081101.3Re-query CCDS DB by Nucleotide ID:NM_026825Re-query CCDS DB by Protein ID:NP_081101Link to BLAST:NP_081101.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081101.3 1374 Q6EDY6-1 1374 100% 0 0

Chromosomal Locations for CCDS 36621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24013327 24013460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24022496 24022636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24024323 24024535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24025854 24025935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24036185 24036608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24041673 24041785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24044174 24044370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24045016 24045082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24064577 24064726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24067132 24067219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24069631 24069806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24073940 24074071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24075612 24075740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24081929 24082027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24088978 24089071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24092506 24092574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24094398 24094570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24098806 24098860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24098961 24099060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24099582 24099663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24102072 24102083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24106309 24106378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24108490 24108594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24111810 24111886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24112014 24112091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24115475 24115578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24121839 24121925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24137137 24137231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24139289 24139377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24141656 24141731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24154678 24154751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24154984 24155054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24155390 24155487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24164801 24164922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24173616 24173675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24178207 24178257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24276457 24276554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24280561 24280600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4125 nt):
ATGACCGACGAGAGCTCCGATGTCCCCCGGGAGTTAATGGAAAGCATCAAGGATGTTATTGGCAGGAAGA
TCAAAATCTCAGTGAAGAAGAAAGTGAAGTTGGAAGTGAAGGGCGACAGGGTGGAAAACAAAGTGCTGGT
GCTCACATCATGCCGAGCCTTCCTCCTGTCAGCACGCATCCCCAGCAAGCTCGAGTTAACCTTCAGTTAT
CTAGAGATTCATGGAGTCATCTGCCACAAGCCAGCCCAGATGGTTGTGGAGACTGAGAAGTGTAACATGT
CCATGAAGATGGTGTCCCCAGAGGATGTGAGTGAAGTGCTGGCTCACATAGGCACCTGCTTGCGGAGGAT
ATTCCCAGGCCTTTCCCCACTGAGAATCATGAAGAAAGTCTCCATGGAGCCATCTGAACGTCTGGCCAGT
CTCCAGGCCCTGTGGGACAGCCAGACCTTGGCTGAGCCAGGCCCCTGTGGTGGGTTTTCTCAGATGTATG
CCTGTGTGTGCGACTGGCTGGGCTTTTCATACAAGGAAGAAGTGCAGTGGGATGTGGATACAATTTATCT
GACACAAGACACCAGGGAATTAAATTTACAGGACTTCAGTCATCTCGAGCACAGAGACCTGATCCCCATC
ATTGCTGCCCTGGAGTATAACCAGTGGTTCACCAAACTGTCCTCTAAGGATCTCAAACTGTCCACGGATG
TTTGTGAACAGATTTTGAGAGTGGTGAGTAGGTCCAATCGACTGGAAGAGTTGGTGTTGGAAAATGCTGG
ACTCAGAATAGATTTTGCACAGAAATTGGCCGGTGCTCTAGCACACAATCCTAACTCAGGACTTCACACA
ATCAACCTTGCTGGGAACTCGCTGGAGGATCGAGGTGTGTCCTCCTTAAGTATTCAATTTGCCAAACTCC
CAAAGGGATTGAAGCATTTGAACCTCTCTAAAACCTCATTGTCACCTAAAGGGGTGAACAGCCTTTGTCA
GTCCCTCAGTGCCAACCCTCTGACTGCCTCTACCCTCACCCACCTGGACCTCTCAGGGAATGCCCTCCGC
GGAGATGACCTCTCGCACATGTACAATTTTTTGGCCCAGCCCAACACCATTGTTCATCTGGATCTATCTA
ATACAGAATGTTCTCTGGAGATGGTGTGTAGCGCTCTCCTCCGGGGTTGCCTTCAGTGTCTCGCTGTGCT
CAATCTCTCCAGATCTGTCTTCTCTCACAGGAAAGGAAAGGAAGTCCCTCCGTCTTTCAAGCAGTTTTTC
AGCAGTTCTCTGGCTTTGATCCAAATCAACCTTTCAGGCACGAAGCTGTCTCCCGAGCCCTTGAAAGCGC
TGCTCTTGGGCCTGGCCTGCAATCATAGCCTGAAGGGAGTCTCTCTGGATCTCAGCAACTGTGAGCTTGG
CCACTGTCTGAGGTCAGGAGGAGCTCAAGTGTTAGAAGGCTGCATCGCTGAAATCCACAACATCACCAGC
TTAGATATCTCTGACAATGGTTTAGAATCCGACCTATCTACCCTAATTGTGTGGCTCAGTAAAAACAGAT
CAATACAGCACCTGGCATTGGGCAAAAATTTTAATAATATGAAATCCAAAAATCTGACGCCTGTGTTGGA
CAACTTAGTGCAGATGATCCAAGATGAAGACTCTCCTCTGCAGTCGTTGTCCCTGGCTGACTCAAAACTC
AAGGCTGAGGTCACCATCATCATCAATGCCCTGGGCAGCAACACCTCCCTGACCAAAGTGGACATCAGTG
GGAATGGCATGGGGGACATGGGAGCGAAGATGCTGGCCAAGGCTCTCCAGATCAACACCAAACTCAGGAC
AGTCATCTGGGACAAAAACAACATCACTGCACAAGGCTTTCAAGACATAGCTGTTGCTATGGAAAAGAAC
TACACACTGCGATTTATGCCAATTCCGATGTATGATGCCGCTCAAGCTCTCAAAACCAACCCCGAGAAAA
CAGAAGAGGCTCTGCAGAAGATAGAAAATTATCTGCTCCGGAATCACGAGACCAGGAAATACCTTCAGGA
GCAGGCCTATCGCCTCCAGCAGGGCATCGTCACCAGCACCACCCAGCAGATGATTGACCGGATATGTGTG
AAGGTTCAGGATCACCTCAACTCCTTACGAGCCTGTGGGGGTGATGCTATTCAGGAGGATTTAAAGGCAG
CGGAGCGGCTCATGCGAGATGCTAAGAACTCTAAAACATTGTTGCCCAATTTATATCATGTGGGCGGTGC
ATCCTGGGCAGGAGCCAGTGGGCTGTCATCCAGTCCCATTCAGGAGACCCTGGAGTCGATGGCTGGAGAA
GTCACAAGAGTGGTGGATGAACAACTGAAGGATTTGCTAGAATCCATGGTGGACGCAGCCGAGACCCTCT
GCCCCAACGTCATGAGAAAAGCCCACATCCGACAGGACCTGATCCATGCCAGCACCGAAAAGATTTCCAT
CCCACGTACCTTTGTTAAAAATGTCCTGTTGGAACAGTCCGGGATTGACATTCTTAACAAAATCAGTGAG
GTGAAGCTGACAGTGGCCTCGTTCTTGTCTGACCGGATCGTCGATGAGATCCTGGATTCTCTCTCCAGCA
GCCATCGGAAGCTGGCCAACCATTTCAGCAGGCTAAACAAGAGCCTTCCCCAGCGAGAGGACCTAGAGGT
GGAGCTGGTGGAGGAGAAGCCGGTGAAACGGGCCATCCTCACGGTAGAGGATCTCACAGAGGTGGAGAGG
CTGGAAGACCTAGACACTTGTATGATGACTCCTAAGTCCAAGAGGAAGAGCATCCACAGCCGAATGCTGC
GGCCTGTCTCCAGGGCCTTCGAAATGGAGTTTGATCTTGATAAAGCCCTGGAAGAGGTGCCGATTCACAT
CGAAGACCCACCTTTCCCATCAGTCCGGCAAGAGAAGCGAAGCTCGGGGTTAATCTCTGAGCTGCCCTCG
GAGGAAGGCAGGAGACTGGAACACTTCACCAAGTTAAGGCCCAAGCGGAACAAGAAGCAGCAACCTACGC
AAGCAGCGGTCTGTACCATCAGCATCTTGCCCCAGGATGGAGAACAGAATGGCCTCATGGGCAGAGTGGA
TGAAGGGGTAGATGAGTTTTTCACCAAGAAGGTGACTAAAATGGATTGCAAGAGGTCATCCTCGCGCTCC
TCAGATGCCCACGAACTCGGGGAAGGAGATGAGAAGAAAAAACGGGACTCTCGGAGGAGTGGCTTCCTCA
ACCTGATTAAATCCAGGTCCAGATCTGAGCGGCCACCCACAGTCCTGATGACGGAAGAGCTCTCCTCCCC
GAAAGGGGCAATGCGGAGCCCACCAGTGGATACCACCAGGAAGGAGATAAAGGCAGCGGAGCACAATGGT
GCTCCAGACCGCACAGAAGAGATTAAGACACCGGAACCCCTGGAGGAGGGTCCAGCAGAGGAAGCTGGCA
GGGCTGAGCGCAGTGACAGCAGGGGCAGCCCGCAGGGTGGCCGGCGCTATGTGCAGGTGATGGGCAGCGG
CCTGCTGGCCGAGATGAAGGCCAAGCAGGAGCGGAGGGCAGCATGTGCACAGAAGAAGCTCGGCAATGAT
GTCATCTCCCAGGATCCTTCCAGCCCAGTCTCGTGCAACACAGAGCGTTTAGAAGGAGGGGCGACAGTGC
CTAAACTGCAACCAGGTCTTCCAGAGGCCCGCTTTGGTTCGGGAACACCAGAAAAGAATGCCAAAGCTGA
ACCCAGAGTGGATGGAGGCTGCAGGTCCCGGAGCTCCTCCAGCATGCCCACCAGCCCAAAGCCCCTCCTT
CAGTCCCCTAAGCCCAGCCCTTCAGCCCGGCCTTCTATCCCTCAGAAGCCAAGAACTGCCTCCCGACCTG
AAGACACCCCAGACTCTCCATCTGGTCCTAGTTCCCCTAAAGTTGCCCTCCTTCCACCCATCCTCAAAAA
AGTCTCCTCGGACAAGGAGCGTGACGGCCAGAACAGCTCACAGTCCAGTCCTAGGAGCTTCTCCCAGGAA
GCCTCAAGGAGAAGCTGGGGCCCGGCCCAGGAGTATCAAGAACAGAAGCAACGGTCCTCGGGCAAAGATG
GTCACCAAGGGAGCAAATGCAGTGACTCTGGAGAAGAGGCAGAAAAAGAGTTTATTTTTGTGTAA

Translation (1374 aa):
MTDESSDVPRELMESIKDVIGRKIKISVKKKVKLEVKGDRVENKVLVLTSCRAFLLSARIPSKLELTFSY
LEIHGVICHKPAQMVVETEKCNMSMKMVSPEDVSEVLAHIGTCLRRIFPGLSPLRIMKKVSMEPSERLAS
LQALWDSQTLAEPGPCGGFSQMYACVCDWLGFSYKEEVQWDVDTIYLTQDTRELNLQDFSHLEHRDLIPI
IAALEYNQWFTKLSSKDLKLSTDVCEQILRVVSRSNRLEELVLENAGLRIDFAQKLAGALAHNPNSGLHT
INLAGNSLEDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPKGVNSLCQSLSANPLTASTLTHLDLSGNALR
GDDLSHMYNFLAQPNTIVHLDLSNTECSLEMVCSALLRGCLQCLAVLNLSRSVFSHRKGKEVPPSFKQFF
SSSLALIQINLSGTKLSPEPLKALLLGLACNHSLKGVSLDLSNCELGHCLRSGGAQVLEGCIAEIHNITS
LDISDNGLESDLSTLIVWLSKNRSIQHLALGKNFNNMKSKNLTPVLDNLVQMIQDEDSPLQSLSLADSKL
KAEVTIIINALGSNTSLTKVDISGNGMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDIAVAMEKN
YTLRFMPIPMYDAAQALKTNPEKTEEALQKIENYLLRNHETRKYLQEQAYRLQQGIVTSTTQQMIDRICV
KVQDHLNSLRACGGDAIQEDLKAAERLMRDAKNSKTLLPNLYHVGGASWAGASGLSSSPIQETLESMAGE
VTRVVDEQLKDLLESMVDAAETLCPNVMRKAHIRQDLIHASTEKISIPRTFVKNVLLEQSGIDILNKISE
VKLTVASFLSDRIVDEILDSLSSSHRKLANHFSRLNKSLPQREDLEVELVEEKPVKRAILTVEDLTEVER
LEDLDTCMMTPKSKRKSIHSRMLRPVSRAFEMEFDLDKALEEVPIHIEDPPFPSVRQEKRSSGLISELPS
EEGRRLEHFTKLRPKRNKKQQPTQAAVCTISILPQDGEQNGLMGRVDEGVDEFFTKKVTKMDCKRSSSRS
SDAHELGEGDEKKKRDSRRSGFLNLIKSRSRSERPPTVLMTEELSSPKGAMRSPPVDTTRKEIKAAEHNG
APDRTEEIKTPEPLEEGPAEEAGRAERSDSRGSPQGGRRYVQVMGSGLLAEMKAKQERRAACAQKKLGND
VISQDPSSPVSCNTERLEGGATVPKLQPGLPEARFGSGTPEKNAKAEPRVDGGCRSRSSSSMPTSPKPLL
QSPKPSPSARPSIPQKPRTASRPEDTPDSPSGPSSPKVALLPPILKKVSSDKERDGQNSSQSSPRSFSQE
ASRRSWGPAQEYQEQKQRSSGKDGHQGSKCSDSGEEAEKEFIFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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