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Report for CCDS27891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27891.1 Public Mus musculus 15 Hoxc12 23 108 98 CCDS HistoryNCBI Gene:15421Re-query CCDS DB by CCDS ID:27891.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055562.2 ENSMUSP00000051003.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055562.2Link to Ensembl Protein Viewer:ENSMUSP00000051003.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000055562Re-query CCDS DB by Protein ID:ENSMUSP00000051003
Original member Current member NCBI NM_010463.2 NP_034593.1 Accepted alive Link to Nucleotide Sequence:NM_010463.2Link to Protein Sequence:NP_034593.1Re-query CCDS DB by Nucleotide ID:NM_010463Re-query CCDS DB by Protein ID:NP_034593Link to BLAST:NP_034593.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034593.1 280 Q8K5B8 280 100% 0 0

Chromosomal Locations for CCDS 27891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102936853 102937456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102938279 102938517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGGCGAGCATAATCTCCTGAATCCTGGGTTTGTGGGGCCGCTGGTGAATATCCACACAGGAGACACCT
TCTACTTCCCCAACTTCCGCGCGTCAGGGGCACAACTCCCGGGGCTGCCTTCGCTGTCCTACCCACGCCG
CGACAACGTGTGCTCGCTGCCTTGGCCGTCGGCCGAGCCGTGCAATGGCTACCCACAGCCCTATCTCGGC
AGTCCCGTGTCTCTCAACCCGCCTTTCGGCCGCACGTGCGAGTTGGCTCGCGTGGAGGATAGCAAGGGTT
ACTACCGAGAACCCTGCGCTGAGGGCGGCGGCGGGGGCCTAAAGCGGGAGGAGCGCGGGCGCGAACCCGG
AGCGGGACCCGGGGCAGCGCTACTGCAGCTGGAGCCGTCGGGGCCACCTGCGCTCGGCTTCAAGTACGAC
TACACGGCGAGCGGCGGCGGTGGCGACGGCAGCACGGGACCCCCCCACGATCCACCCTCGTGCCAGTCAC
TGGAATCCGACTCCAGTTCGTCCCTACTCAACGAGGGCAATAAGAGCGCCAGCGCTGGTGACCCTGGCTC
TCTGGTTTCGCCGTTGAACCCAGGCGGCGGGCTCTCAGCCAGCGGCGCGCCCTGGTACCCGATCCACAGC
CGCTCGCGAAAGAAGCGCAAGCCGTATTCGAAGTTGCAGCTGGCTGAGCTGGAGGGCGAGTTTCTGGTCA
ACGAGTTCATCACACGCCAGCGTCGGAGGGAACTCTCGGACCGCTTGAATCTTAGTGATCAGCAGGTCAA
GATTTGGTTCCAGAACCGGAGAATGAAAAAGAAAAGACTTCTGCTGAGGGAGCAAGCTCTCTCCTTCTTC
TAG

Translation (280 aa):
MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLPWPSAEPCNGYPQPYLG
SPVSLNPPFGRTCELARVEDSKGYYREPCAEGGGGGLKREERGREPGAGPGAALLQLEPSGPPALGFKYD
YTASGGGGDGSTGPPHDPPSCQSLESDSSSSLLNEGNKSASAGDPGSLVSPLNPGGGLSASGAPWYPIHS
RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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