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Report for CCDS16147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16147.1 Public Mus musculus 2 Hoxd1 23 108 98 CCDS HistoryNCBI Gene:15429Re-query CCDS DB by CCDS ID:16147.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16147.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047793.5 ENSMUSP00000043078.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047793.5Link to Ensembl Protein Viewer:ENSMUSP00000043078.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047793Re-query CCDS DB by Protein ID:ENSMUSP00000043078
Original member Current member NCBI NM_010467.2 NP_034597.2 Accepted alive Link to Nucleotide Sequence:NM_010467.2Link to Protein Sequence:NP_034597.2Re-query CCDS DB by Nucleotide ID:NM_010467Re-query CCDS DB by Protein ID:NP_034597Link to BLAST:NP_034597.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034597.2 328 Q01822 328 100% 0 0

Chromosomal Locations for CCDS 16147.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74763102 74763753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74764055 74764389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGAGCTCTTACCTGGAGTACGTGTCGTGCGCCGCGGGCGGTGGCAGCGGAGGGGTAGGCGGCGACGTGC
TCGGCTTCGCACCCAAGTTCTGCCGCGCCGACGCGCGCCCTGTGGCCCTGCAGCCGGCCTTCCCCCTGGG
CAGCGGAGACGGCGCCTTCGTGAGCTGCCTGCCCCTGGCCACCGCTCGGCCCACGCCGTCGCCTCCCGCA
GGCCCCGCTCAGTCCCCGGTCCCACAGCCCGCCGCGCCCCGGTACGCGCCCTGCACCCTGGAAGGCGCCT
ACGAGCGGGGCGCCGCACCTGCCTCTGCCGCCGAGTATGGCTTCTTGGGGTCCGGGCCGGCGTTTGACTT
CCCGGGCGCACTTGGGAGAGCGGCGGACGAGGGCGGGGCGCACGTCCACTATGCCACCTCGGCGGTCTTC
TCCGGCGGGGGATCATTCCTGCTCAGCGGCCAGGTGGACTTCGCTGCCTTTGGCGAGCCTGGCCCCTTCC
CCGCGTGTCTCAAGGAGCCCGCAGACGGCCACCCCGGGCCCTTTCAGACTGTGTCCCCGGCCCCTGGAGC
CTGCCCCAAGCCGGCCTCTCCCACCTCCAGCCTCCCGGCCGCCCACAGCACTTTCGAGTGGATGAAAGTG
AAGAGGAACGCCCCCAAGAAAAGCAAACTGTCCGAATATGGAGCCACAAGCCCTCCCAGTGCCATCCGCA
CAAATTTCAGCACCAAGCAACTGACAGAGCTAGAGAAAGAGTTTCATTTCAATAAGTACCTAACTAGAGC
CCGACGCATCGAGATAGCCAACTGTTTACAGCTGAATGACACCCAGGTCAAAATCTGGTTCCAGAACCGT
AGGATGAAGCAGAAGAAGAGGGAACGAGAGGGGCTTCTGGCCACAGCTGCCTCTGTGGCCTCGATTAAGC
TTCCCCGGTCAGAAACAAGTCCCATCAAATCTGGCCGGAATCTAGGAAGCCCTTCTCAGGCTCAAGAGCC
TTCCTGA

Translation (328 aa):
MSSYLEYVSCAAGGGSGGVGGDVLGFAPKFCRADARPVALQPAFPLGSGDGAFVSCLPLATARPTPSPPA
GPAQSPVPQPAAPRYAPCTLEGAYERGAAPASAAEYGFLGSGPAFDFPGALGRAADEGGAHVHYATSAVF
SGGGSFLLSGQVDFAAFGEPGPFPACLKEPADGHPGPFQTVSPAPGACPKPASPTSSLPAAHSTFEWMKV
KRNAPKKSKLSEYGATSPPSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNR
RMKQKKREREGLLATAASVASIKLPRSETSPIKSGRNLGSPSQAQEPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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