NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39265.1 Public Mus musculus 5 Hpd 23 108 98 CCDS HistoryNCBI Gene:15445Re-query CCDS DB by CCDS ID:39265.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39265.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031398.13 ENSMUSP00000031398.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031398.13Link to Ensembl Protein Viewer:ENSMUSP00000031398.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031398Re-query CCDS DB by Protein ID:ENSMUSP00000031398
Original member Current member NCBI NM_008277.3 NP_032303.1 Accepted alive Link to Nucleotide Sequence:NM_008277.3Link to Protein Sequence:NP_032303.1Re-query CCDS DB by Nucleotide ID:NM_008277Re-query CCDS DB by Protein ID:NP_032303Link to BLAST:NP_032303.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032303.1 393 P49429 393 100% 0 0

Chromosomal Locations for CCDS 39265.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123171978 123172088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123172170 123172286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123174351 123174473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123175891 123175962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123176092 123176254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123177529 123177606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123178169 123178272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123179366 123179455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123180647 123180729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123180887 123180929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123181423 123181527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123181861 123181923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123182546 123182572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123182674 123182676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGACAACCTACAACAACAAAGGACCAAAGCCTGAGAGAGGCCGGTTCCTCCATTTCCACTCGGTGACCT
TCTGGGTTGGCAATGCCAAGCAGGCTGCTTCCTTCTACTGCAACAAGATGGGCTTTGAACCTCTGGCCTA
CAGGGGCCTAGAGACTGGCTCCCGGGAGGTAGTCAGCCACGTCATCAAGCAAGGGAAAATTGTGTTTGTT
CTCTGCTCTGCTCTCAATCCCTGGAACAAAGAGATGGGCGACCACTTGGTGAAGCATGGCGACGGGGTGA
AAGACATCGCATTCGAGGTGGAAGACTGCGACCACATTGTGCAGAAAGCTCGAGAACGGGGCGCCAAAAT
TGTGCGGGAGCCATGGGTGGAGCAAGACAAATTTGGGAAGGTGAAGTTTGCTGTGCTGCAGACGTATGGA
GATACCACACACACCCTGGTGGAGAAGATCAACTACACTGGCCGTTTCTTACCTGGATTCGAGGCCCCAA
CATACAAGGATACCCTGCTTCCAAAACTACCCAGATGTAACCTTGAGATCATTGACCACATTGTAGGCAA
CCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATGGTACCTGAAAAACCTGCAGTTCCACCGGTTCTGG
TCCGTGGACGACACGCAGGTGCACACGGAGTACAGCTCTCTGCGCTCCATTGTGGTGACCAACTACGAGG
AATCCATCAAAATGCCCATCAACGAGCCAGCTCCGGGCAGGAAGAAGTCTCAGATCCAGGAATATGTGGA
CTATAATGGGGGTGCTGGGGTCCAGCACATCGCTCTCAAGACGGAAGACATCATCACAGCAATCCGCCAC
TTGAGGGAGCGAGGCACGGAGTTCTTGGCCGCCCCATCTTCTTACTACAAACTGCTTCGGGAGAATCTCA
AGTCAGCCAAGATCCAGGTGAAAGAGAGCATGGACGTCCTGGAGGAGCTGCATATCCTAGTCGACTATGA
CGAGAAAGGCTACCTCCTACAGATCTTCACCAAGCCCATGCAGGACCGGCCCACACTCTTCCTGGAAGTC
ATTCAACGTCACAACCACCAGGGCTTTGGAGCGGGCAACTTCAACTCTCTGTTCAAGGCGTTCGAGGAGG
AGCAAGCCCTACGGGGCAACCTCACTGACCTGGAGCCCAATGGTGTGAGGTCTGGAATGTAA

Translation (393 aa):
MTTYNNKGPKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYRGLETGSREVVSHVIKQGKIVFV
LCSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDHIVQKARERGAKIVREPWVEQDKFGKVKFAVLQTYG
DTTHTLVEKINYTGRFLPGFEAPTYKDTLLPKLPRCNLEIIDHIVGNQPDQEMQSASEWYLKNLQFHRFW
SVDDTQVHTEYSSLRSIVVTNYEESIKMPINEPAPGRKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRH
LRERGTEFLAAPSSYYKLLRENLKSAKIQVKESMDVLEELHILVDYDEKGYLLQIFTKPMQDRPTLFLEV
IQRHNHQGFGAGNFNSLFKAFEEEQALRGNLTDLEPNGVRSGM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH