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Report for CCDS40942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40942.1 Public Mus musculus X Rhox2h 23 108 98 CCDS HistoryNCBI Gene:622301Re-query CCDS DB by CCDS ID:40942.1Re-query CCDS DB by GeneID:622301See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 40942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115162.1 ENSMUSP00000110816.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115162.1Link to Ensembl Protein Viewer:ENSMUSP00000110816.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115162Re-query CCDS DB by Protein ID:ENSMUSP00000110816
Original member Current member NCBI NM_001100465.1 NP_001093935.1 Accepted alive Link to Nucleotide Sequence:NM_001100465.1Link to Protein Sequence:NP_001093935.1Re-query CCDS DB by Nucleotide ID:NM_001100465Re-query CCDS DB by Protein ID:NP_001093935Link to BLAST:NP_001093935.1

Chromosomal Locations for CCDS 40942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37669172 37669222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37671020 37671065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37672609 37673020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37673183 37673249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGAGAAAAGAAGCATCAATTACCTGCTTGATGTGGGACCTGAGGAGGATGAGGAAAATGCGAATGGTG
TAAAGACTCTGATGGTCTTGCTGGCTGGAGAGGGAAGAAACGAGGGAGAGAGTGGACGGGGCCTGCCTGG
GTCGGGAGTCTCAGCAGCGGAAGGATACAGAGCAGGAGAATTAAGTGCAGGTGGGCCGGCTGCGCCTGTA
GCAGGCCTCATGGATAACAGCAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAAGGAGACGC
AGCCAGAGGAGCCAGTCCCTGATTCCATGGGGGATTTGGAAAATGTAAAGCCTATGTCAGGGCCGTGGTC
CACTGTTAATCCTGTGAGAGTGTTGGTGCCCAAATTCCGGCACCTTTGGCGACACAACTTCAATGTGCTG
CAACTACAAGAGCTGGAGAGCATCTTCCAGTGCAATCACTACATCAGCACTACAGAGGAAAATCGCCTGG
CAAGATCCATGGGTGTGAGTGAAGCCACAGTGCAGGAATGGTTTTTGAAGAGGAGAGAGAAATACAGGAG
TTATAAGAGGCTGTAA

Translation (191 aa):
MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPV
AGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVL
QLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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