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Report for CCDS19141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19141.1 Public Mus musculus 5 Htr5a 23 108 98 CCDS HistoryNCBI Gene:15563Re-query CCDS DB by CCDS ID:19141.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19141.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036227.6 ENSMUSP00000038884.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036227.6Link to Ensembl Protein Viewer:ENSMUSP00000038884.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036227Re-query CCDS DB by Protein ID:ENSMUSP00000038884
Original member NCBI NM_008314.2 NP_032340.2 Updated not alive Link to Nucleotide Sequence:NM_008314.2Link to Protein Sequence:NP_032340.2Re-query CCDS DB by Nucleotide ID:NM_008314Re-query CCDS DB by Protein ID:NP_032340
Current member NCBI NM_008314.3 NP_032340.2 Accepted alive Link to Nucleotide Sequence:NM_008314.3Link to Protein Sequence:NP_032340.2Re-query CCDS DB by Nucleotide ID:NM_008314Re-query CCDS DB by Protein ID:NP_032340Link to BLAST:NP_032340.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032340.2 357 P30966 357 100% 0 0

Chromosomal Locations for CCDS 19141.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 27842449 27843189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27850754 27851086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGATCTGCCTGTAAACTTGACCTCCTTTTCTCTCTCTACTCCCTCCTCTTTGGAACCTAACCGCAGCT
TGGACACGGAAGTCCTGCGCCCTAGTCGGCCTTTTCTCTCAGCTTTCCGAGTGCTAGTCCTGACTTTGTT
GGGCTTTCTAGCTGCGGCCACATTCACTTGGAACCTGCTGGTGCTGGCTACCATCCTCAAGGTACGCACC
TTCCACCGAGTACCACACAACCTGGTAGCTTCCATGGCCATCTCGGATGTGCTAGTGGCTGTGCTGGTTA
TGCCACTGAGCCTGGTACATGAGCTGTCTGGGCGCCGCTGGCAGCTGGGCCGGCGTCTATGCCAGCTGTG
GATCGCATGTGACGTGCTCTGCTGTACTGCCAGCATCTGGAATGTGACAGCAATAGCTCTGGACCGCTAC
TGGTCAATCACGCGCCACCTGGAGTACACACTCCGTACCCGCAAGCGTGTCTCCAATGTGATGATCCTGC
TCACCTGGGCACTCTCCACTGTCATCTCTCTGGCTCCACTGCTATTTGGCTGGGGAGAGACTTATTCTGA
GCCCAGTGAGGAATGCCAAGTCAGTCGCGAGCCTTCCTACACCGTGTTCTCCACCGTGGGTGCCTTCTAC
CTGCCGCTGTGCGTGGTGCTCTTTGTGTACTGGAAAATTTACAGGGCGGCGAAATTCCGCATGGGCTCCA
GGAAGACCAACAGCGTCTCCCCCGTACCCGAAGCTGTGGAGGTGAAGAATGCTACACAACATCCCCAGAT
GGTGTTCACGGTCCGCCATGCCACCGTCACCTTCCAGACAGAAGGGGATACGTGGAGGGAGCAGAAGGAG
CAAAGGGCAGCCCTCATGGTGGGCATCCTCATCGGAGTGTTTGTGCTCTGCTGGTTCCCTTTCTTCGTCA
CAGAGCTCATCAGTCCCCTGTGTTCCTGGGACGTCCCTGCCATCTGGAAGAGCATCTTCCTGTGGTTGGG
CTATTCTAATTCCTTCTTCAACCCACTCATCTACACAGCATTCAACAGGAGCTACAGCAGTGCTTTCAAG
GTCTTCTTCTCCAAGCAACAATGA

Translation (357 aa):
MDLPVNLTSFSLSTPSSLEPNRSLDTEVLRPSRPFLSAFRVLVLTLLGFLAAATFTWNLLVLATILKVRT
FHRVPHNLVASMAISDVLVAVLVMPLSLVHELSGRRWQLGRRLCQLWIACDVLCCTASIWNVTAIALDRY
WSITRHLEYTLRTRKRVSNVMILLTWALSTVISLAPLLFGWGETYSEPSEECQVSREPSYTVFSTVGAFY
LPLCVVLFVYWKIYRAAKFRMGSRKTNSVSPVPEAVEVKNATQHPQMVFTVRHATVTFQTEGDTWREQKE
QRAALMVGILIGVFVLCWFPFFVTELISPLCSWDVPAIWKSIFLWLGYSNSFFNPLIYTAFNRSYSSAFK
VFFSKQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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