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Report for CCDS29616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29616.1 Public Mus musculus 19 Or10q3 23 108 98 CCDS HistoryNCBI Gene:257938Re-query CCDS DB by CCDS ID:29616.1Re-query CCDS DB by GeneID:257938See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087857.2 ENSMUSP00000085163.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087857.2Link to Ensembl Protein Viewer:ENSMUSP00000085163.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000087857Re-query CCDS DB by Protein ID:ENSMUSP00000085163
Original member Current member EBI ENSMUST00000217617.1 ENSMUSP00000148848.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217617.1Link to Ensembl Protein Viewer:ENSMUSP00000148848.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217617Re-query CCDS DB by Protein ID:ENSMUSP00000148848
Original member Current member EBI ENSMUST00000213954.1 ENSMUSP00000150966.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213954.1Link to Ensembl Protein Viewer:ENSMUSP00000150966.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213954Re-query CCDS DB by Protein ID:ENSMUSP00000150966
Original member Current member NCBI NM_001011775.2 NP_001011775.1 Accepted alive Link to Nucleotide Sequence:NM_001011775.2Link to Protein Sequence:NP_001011775.1Re-query CCDS DB by Nucleotide ID:NM_001011775Re-query CCDS DB by Protein ID:NP_001011775Link to BLAST:NP_001011775.1

Chromosomal Locations for CCDS 29616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11870183 11871214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGAGGAGGAAAATCAGACAGGAGTGGTATATTTCCACTTCCGCCCCTTTTCAACCAACTCTACAGTGG
CTTCCCTAGTGTTTGTGGGCTTCTTGCTGCTGTATCTAGGAAGTCTCATTGGAAACCTCACCATTGGGCT
CACAGTCTGGCAGGATCACTCCCTCCATACCCCGATGTACTTCTTCCTTTTTGTGTTGGCCACATTAGAG
CTTGGCTATTCCACCAACATTGCTCCACTGACTCTAGCTAGCATTCTCTCCATGGGGAAGATGCTTATCT
CTCTGCCCAGCTGTGGGGCCCAGATGTTCTTCTTCATCCTCCTTGGAGGATCTGACTGTGTCCTGCTGGC
CATCATGGCCTATGACAGGTATGTGGCCATCTGTCATCCATTGCATTACAGCCTCATTATGAGTTGGCAG
CTCTGTGGGCAGATGGCTTTAGGTTCTCTGGGGCTGGGTTTCCTTTTGTCACTGCCTTTGACCATTCTGA
TCTGCCACCTCCCATTCTGTGGCCACAATGAAATCTACCACTTCTTCTGCGACATGCCTGCAGTCATGCG
CCTGGCCTGTACAGATACCCATATACACCAGGCAGCTCTCTTTGCCATCAGCGTGGCTGCAGTAGCCATT
CCTTTTCTCCTTATCTGTCTCTCCTATGGTTGCATTGTGGCTACCATCCTGAGGATGACGTCAGCAGAGG
GGAAACGCCGGGCTTTCTCCACCTGCTCTTCACACCTCCTCGTGGTTGTCCTGCAGTATGGATGTTGCAC
CCTCATCTACCTTCGCCCTAGCTCCAGCTACTCCCCGGAAGAAGGCCGGGCAGTATCTGTTGTCTATACC
TTCTTCTCCCCATTGCTGAATCCCTTAATCTATAGTTTAAGGAACCAAGAGGTGACTGATGCAGTAAAAA
GACTTTTGACAAGAATGTTCTGGTTCAGAAAGCCAGAAAGATTCCTTCCTGGGGGAAATTATTCACTGAA
CAAGGGAGAACACAGTATGATGGAAAAGAAACTCAAAATCAATAGGCCATGA

Translation (343 aa):
MEEENQTGVVYFHFRPFSTNSTVASLVFVGFLLLYLGSLIGNLTIGLTVWQDHSLHTPMYFFLFVLATLE
LGYSTNIAPLTLASILSMGKMLISLPSCGAQMFFFILLGGSDCVLLAIMAYDRYVAICHPLHYSLIMSWQ
LCGQMALGSLGLGFLLSLPLTILICHLPFCGHNEIYHFFCDMPAVMRLACTDTHIHQAALFAISVAAVAI
PFLLICLSYGCIVATILRMTSAEGKRRAFSTCSSHLLVVVLQYGCCTLIYLRPSSSYSPEEGRAVSVVYT
FFSPLLNPLIYSLRNQEVTDAVKRLLTRMFWFRKPERFLPGGNYSLNKGEHSMMEKKLKINRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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