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Report for CCDS89669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89669.1 Public Mus musculus 3 Rprd2 23 108 98 CCDS HistoryNCBI Gene:75137Re-query CCDS DB by CCDS ID:89669.1Re-query CCDS DB by GeneID:75137See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89669.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197449.1 ENSMUSP00000143240.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197449.1Link to Ensembl Protein Viewer:ENSMUSP00000143240.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197449Re-query CCDS DB by Protein ID:ENSMUSP00000143240
Original member Current member NCBI NM_028328.2 NP_082604.2 Accepted alive Link to Nucleotide Sequence:NM_028328.2Link to Protein Sequence:NP_082604.2Re-query CCDS DB by Nucleotide ID:NM_028328Re-query CCDS DB by Protein ID:NP_082604Link to BLAST:NP_082604.2

Chromosomal Locations for CCDS 89669.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95774104 95774372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95776515 95776797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95780415 95780590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95784214 95784340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95785054 95785106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95786320 95786397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95787284 95787384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95790100 95790229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95818547 95818751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCGGCCGGCGGCGGCGGAGGCAGCAGTAAGGCCTCCTCCTCGTCGGCCTCGTCCGCAGGGGCCCTGG
AGTCTTCGTTGGATCGAAAATTCCAGTCGGTGACCAACACCATGGAATCCATTCAAGGCTTGTCGTCCTG
GTGTATAGAAAACAAGAAACACCACAGTACAATCGTCTACCATTGGATGAAGTGGCTCCGGAGATCTACA
TATCCCCATCGTTTGAATCTCTTTTATCTTGCCAATGATGTCATACAGAATTGTAAACGGAAAAATGCAA
TCATATTTCGTGAATCATTTGCTGATGTGCTTCCTGAAGCAGCTGCTCTAGTGAAGGATCCATCCGTCTC
TAAGTCTATAGAACGAATCTTTAAAATCTGGGAAGATCGAAATGTGTACCCAGAAGACATGATTGTGGCA
TTGAGAGAAGCTTTAAGTACCACTTTCAAAACTCAGAAGCAGCTGAAAGAAAATCTGAACAAACAACCGA
ATAAGCAGTGGAAGAAATCACAAACATCCACGAATCCAAAAGCTGCTCTCAAATCTAAGATTGTTGCTGA
GTTTCGATCTCAGGCCCTCATTGAAGAGTTGCTGATGTACAAACGATCAGAAGATCAGATAGAACTGAAG
GAGAAACAGTTGTCAACTATGAGAGTGGATGTCTGCAGCACAGAAACTCTCAAGTGTTTAAAAGATAAAA
CAGGTGGAAAGAAGTTCTCCAAAGAATTTGAAGAAGCAAGTTCCAAGCTAGAGGAGTTTGTGAATGGATT
AGATAAACAGGTGAAAAATGGGCCCTCACTAACAGAAGCATTAGAGAACGCTGGAATTTTCTATGAAGCA
CAGTACAAGGAAGTGAAAGTGGTCGCTAACGCTTACAAAACCTTCGCTAACCGAGTAAACAACTTAAAGA
AGAAGTTGGATCAATTGAAGTCAACCCTTCCTGATCCTGAGGAATCACCAGTCCCCTCTCCAAGTATGGA
TGCTCCTTCCCCAACTGGTTCTGAGTCTCCATTCCAGGGCATGGGAGGTGAAGAACCCCAGTCACCGGCC
ATGGAGAGTGACAAGTCTGCCACACCCGAGCCTGTGACTGATAACCGTGATGTGGAAGACATGGAACTCT
CAGATGTGGAAGATGATGGATCAAAAATCATTGTGGAGGACCGGAAAGAAAAGCCTGTGGAGAAACCTGC
TGTCTCCACTGGTGTGCCCACCAAGTCAACAGAAAGTGTCTCGAAAGCCTCACCGTGTGCCCCACCGTCT
GTGCCCACGACGGCAGCTCCACCTCTCCCGAAGCCTCTGAGCACTGCACTTCTGTCCCCTTCCCCAACTT
TGGTTTTGCCAAACCTGGCAAATGTGGATCTGGCAAAGATCAGTTCCATCCTTAGCAGCCTAACATCAGT
CATGAAAAATACGGGTAAGTGA

Translation (473 aa):
MAAGGGGGSSKASSSSASSAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRST
YPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSIERIFKIWEDRNVYPEDMIVA
LREALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAALKSKIVAEFRSQALIEELLMYKRSEDQIELK
EKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEASSKLEEFVNGLDKQVKNGPSLTEALENAGIFYEA
QYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEEPQSPA
MESDKSATPEPVTDNRDVEDMELSDVEDDGSKIIVEDRKEKPVEKPAVSTGVPTKSTESVSKASPCAPPS
VPTTAAPPLPKPLSTALLSPSPTLVLPNLANVDLAKISSILSSLTSVMKNTGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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