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Report for CCDS17147.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17147.2 Public Mus musculus 2 Stx16 23 108 98 CCDS HistoryNCBI Gene:228960Re-query CCDS DB by CCDS ID:17147.2Re-query CCDS DB by GeneID:228960See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 17147.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17147.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087908.9 ENSMUSP00000085218.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087908.9Link to Ensembl Protein Viewer:ENSMUSP00000085218.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087908Re-query CCDS DB by Protein ID:ENSMUSP00000085218
Original member Current member NCBI NM_172675.4 NP_766263.2 Accepted alive Link to Nucleotide Sequence:NM_172675.4Link to Protein Sequence:NP_766263.2Re-query CCDS DB by Nucleotide ID:NM_172675Re-query CCDS DB by Protein ID:NP_766263Link to BLAST:NP_766263.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766263.2 326 Q8BVI5 326 100% 0 0

Chromosomal Locations for CCDS 17147.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 174077058 174077189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174084646 174084657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174090621 174090728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174091482 174091622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174092402 174092567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174093434 174093525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174093929 174094072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174095060 174095140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174096919 174097023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAACCCGGCAGCTGT
TAGCCGAGCAAGTGAGTAGTCACACCACCTCCAGCCCTCTGCATTCACGTAGCATTGCTGCGGAGCTGGA
CGAGCTTGCTGATGACCGCATGGCGCTGGTATCAGGCATCAGCCTAGATCCAGAAGCAGCAATTGGCGTG
ACAAAGCGGTCGCCTCCCAAGTGGGTGGATGGCGTGGACGAAATACAGTATGATGTTGGCCGCATTAAAC
AGAAGATGAAGGAGTTAGCCAGCCTTCATGATAAGCATTTGAACAGACCCACCCTGGATGACAGCAGTGA
GGAGGAACATGCCATCGAGATCACCACCCAGGAAGTCACACAGCTCTTCCATAGGTGCCAGCGTGCTGTG
CAGGCCCTGCCCAGCCGGGCACGAAGGGCCTGCTCGGAGCAGGAAGAGCGGCTACTGCGGAACGTGGTGG
CCTCCTTGGCACAGGCCCTGCAGGAGCTGTCCACCAGCTTCCGGCATGCACAGTCTGACTACCTGAAACG
CATGAAAAACCGAGAGGAGAGATCGCAGCATTTCTTCGACACCCCAGTACCACTAATGGATGATGGAGAT
GATGCTACTCTGTATGGTCAGGGCTTCACGGATGACCAGCTGGTGCTGGTAGAGCAAAACACACTGATGG
TGGAGGAGAGGGAGCGAGAGATCCGTCAGATTGTGCAGTCCATTTCAGACCTCAATGAAATCTTCAGGGA
CTTGGGAGCCATGATTGTGGAGCAGGGAACAGTCCTTGATAGAATTGACTATAATGTTGAACAGTCCTGT
GTCAAGACCGAAGATGGCTTGAAACAGCTTCACAAGGCTGAGCAGTACCAGAAGAAGAACCGGAAGATGC
TTGTGATCGTGATCCTGGTGGCCGTCATCATAGTCCTCCTCGTGGCCCTCGTCGCCGTAAAGTCTCGCTA
G

Translation (326 aa):
MATRRLTDAFLLLRNNSIQTRQLLAEQVSSHTTSSPLHSRSIAAELDELADDRMALVSGISLDPEAAIGV
TKRSPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEVTQLFHRCQRAV
QALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRMKNREERSQHFFDTPVPLMDDGD
DATLYGQGFTDDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSC
VKTEDGLKQLHKAEQYQKKNRKMLVIVILVAVIIVLLVALVAVKSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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