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Report for CCDS21533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21533.1 Public Mus musculus 7 Or55b10 23 108 98 CCDS HistoryNCBI Gene:258837Re-query CCDS DB by CCDS ID:21533.1Re-query CCDS DB by GeneID:258837See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21533.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058750.3 ENSMUSP00000052396.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058750.3Link to Ensembl Protein Viewer:ENSMUSP00000052396.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000058750Re-query CCDS DB by Protein ID:ENSMUSP00000052396
Original member Current member EBI ENSMUST00000216116.2 ENSMUSP00000150232.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216116.2Link to Ensembl Protein Viewer:ENSMUSP00000150232.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216116Re-query CCDS DB by Protein ID:ENSMUSP00000150232
Original member Current member NCBI NM_146840.2 NP_667051.1 Accepted alive Link to Nucleotide Sequence:NM_146840.2Link to Protein Sequence:NP_667051.1Re-query CCDS DB by Nucleotide ID:NM_146840Re-query CCDS DB by Protein ID:NP_667051Link to BLAST:NP_667051.1

Chromosomal Locations for CCDS 21533.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102493823 102494773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGTTGGGTTGGAGCAATGGCACCTACAATGAGTCCTACACCAGCTTCCTCCTCATGGGCTTCCCAGGGA
TGCAGGAAGCCAGAGCCCTCCTGGTGCTGCCCTTCCTCAGCCTCTACCTGGTGATCCTCTTCACCAATGC
CCTGGTCATCCACACGGTGGCATCCCAGCGCAGCCTGCACCAGCCCATGTACCTGCTCATTGCCCTGCTC
CTGGCTGTCAATATCTGTGCTGCCACCACGGTGCTGCCCCCCATGCTCTTCAGCTTCTCCACACGCTTCA
ACCGCATCTCCCTCCCTCGATGCTTGGGACAGATGTTCTGCATCTACTTTCTGGTTTCTATGGACTGCAA
CATCCTCCTGGTCATGGCTCTAGATCGCTATGTGGCTATCTGCTACCCTCTCCGCTACCCAGAAATAGTG
ACAGGACAGTTACTGGCTGGTCTGGTGGTGTTGGCAGTCACCAGGAGCACAAGCATTGTTGCTCCAGTGG
TGGTGCTGGCCTCGCGGGTTCGCTTCTGCCGCTCAGATGTGATCCGCCACTTTGCCTGTGAGCACATGGC
CCTGATGAAGCTTTCCTGTGGAGACATCTCGCTGAATAAAACGGCGGGACTCATTATTCGAACCTTTAAT
AGAGTCCTGGATATGCTCCTTCTAGGCACCTCCTACTCCCGCATCATCCATGCTGCCTTCAGGATCTCAT
CAGGTGGAGCACGGTCCAAAGCCCTGAACACCTGTGGTTCCCACCTGCTGGTCATCTTCACCGTCTACTC
CTCCACCATGTCCTCATCCATTGTCTACCGTGTGGCTCGCACTGCCTCCCAAGATGTGCACAACCTGCTC
AGTGCTTTCTATCTGTTGCTCCCGTGTCTGGTCAACCCCATCATCTACGGGGCCAGAACCAAGGAAATCA
GGCAGCACCTGGTAAGGTCATTCCTGAGTGCAGGCCCCTGA

Translation (316 aa):
MLGWSNGTYNESYTSFLLMGFPGMQEARALLVLPFLSLYLVILFTNALVIHTVASQRSLHQPMYLLIALL
LAVNICAATTVLPPMLFSFSTRFNRISLPRCLGQMFCIYFLVSMDCNILLVMALDRYVAICYPLRYPEIV
TGQLLAGLVVLAVTRSTSIVAPVVVLASRVRFCRSDVIRHFACEHMALMKLSCGDISLNKTAGLIIRTFN
RVLDMLLLGTSYSRIIHAAFRISSGGARSKALNTCGSHLLVIFTVYSSTMSSSIVYRVARTASQDVHNLL
SAFYLLLPCLVNPIIYGARTKEIRQHLVRSFLSAGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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