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Report for CCDS51268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51268.1 Public Mus musculus 4 Skint3 23 108 98 CCDS HistoryNCBI Gene:195564Re-query CCDS DB by CCDS ID:51268.1Re-query CCDS DB by GeneID:195564See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170945.1 ENSMUSP00000131300.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170945.1Link to Ensembl Protein Viewer:ENSMUSP00000131300.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170945Re-query CCDS DB by Protein ID:ENSMUSP00000131300
Original member Current member NCBI NM_001102474.2 NP_001095944.1 Accepted alive Link to Nucleotide Sequence:NM_001102474.2Link to Protein Sequence:NP_001095944.1Re-query CCDS DB by Nucleotide ID:NM_001102474Re-query CCDS DB by Protein ID:NP_001095944Link to BLAST:NP_001095944.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095944.1 458 A7TZF0-1 458 100% 0 0

Chromosomal Locations for CCDS 51268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112235741 112235816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112253756 112254103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112255619 112255900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112258881 112258988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112269964 112270071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112277554 112277688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112280194 112280319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112290265 112290389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112298139 112298207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGGATCTATACAAATAATTTTTGCTGCATACTGTGTTGTCTTGTGCGTCCTCCAGATGTTAGTACTGA
GTTCAGAGCAGTTCACAATTACTGGCTTAGAGAGGCCAGTCCTTGCCCCATTAGGTGGAATCCTTGAACT
CAGTTGTCAGTTGTCCCCACCACAAAATGCACAACAAATGGAGATTCGCTGGTTCCGGAATCGCTATACA
GAACCTGTGTACCTGTACAGGAATGGTAAAGACCTGCATGGAGAAACTATCTCCAAGTATGTGGAGCGGA
CAGAACTCCTAAAACATGACATTGGAAAAGGGAAAGTGACCCTCAGGGTCTTTAAAGTGACAGTTGATGA
TGATGGATCATACCATTGTGTCTTCAAAGATGGTATATTCTATGAAGAGCATATCACAGAGGTCAAGGTC
ACTGCCACAAGCTCAGATATAAAGATTATAATGCATCCCCCGAATATTAAAGGTGTGATGCTTGAGTGTC
ATTCAAGAGGTTGGTTCCCTCAGCCTCATATGGAATGGAGAGATAGCAATGGACAGGTCATTCCAGCTAC
ATCAAAATCCCAGTCACAGGATGAAAACAAATTGTTCAACATGACAATGAACCTTTTTGCTGATGTTGGC
CTACACCAGATTGTCACTTGCTACATTCAAAACCTTTTAACTCATCAAGAAGAAAGCATAAGTATTGTCC
TAACAGGTGATCTTTTTTCATGGAAAATTGATTGGATATTGATTTTGAGTATAATAGCATGTGTGATGAT
ACCCTACTCCATGACTTCCTATCTTCAACAACATCTCATACATGGTAGCTGCTCTCAGAGATCACATCAT
TGGAGAAAGAATGCAATGGTATGCATGAGTTCAGTGATTGCAATTATAGGATCCATGCTTATTTTGCATC
TAAAACAAAGAGTCCCAATTTCAGATCAACATTTTGAATTGGATACTTTATACTTGGAAGATATTAGTGT
GATCCTGTGTGTGGTGATTGTGTTTAACCTCAAGCTCAATTTACTTACTTACTACAGATTGGAACGTAAA
TATGATGGATGTACACCTGGATGCAAAGCATGCTTCTATATATTAAAAATAATAATAATAATATTGCCAT
TCGTGTTTACCTTTGGGTGCTATAATGCAATCTTTTTAAAATATCATCAATTACAGAAAAAAGTTTCTAT
TCCAGATCCCTTATATTACTTCTACACTAGCTGGCTTGTGAATATGGAAATGCTGGGAGTATTTCTGGTC
TTCTTTCCTACTTTTATAAACTTAATAGAATTTTCGCAATTCATAAAAACTGTTCCAAAGCCCATATGGT
TATGCCAAGAGAATATGAGAGAAGATGATGCAATAAGACACAGATAA

Translation (458 aa):
MGSIQIIFAAYCVVLCVLQMLVLSSEQFTITGLERPVLAPLGGILELSCQLSPPQNAQQMEIRWFRNRYT
EPVYLYRNGKDLHGETISKYVERTELLKHDIGKGKVTLRVFKVTVDDDGSYHCVFKDGIFYEEHITEVKV
TATSSDIKIIMHPPNIKGVMLECHSRGWFPQPHMEWRDSNGQVIPATSKSQSQDENKLFNMTMNLFADVG
LHQIVTCYIQNLLTHQEESISIVLTGDLFSWKIDWILILSIIACVMIPYSMTSYLQQHLIHGSCSQRSHH
WRKNAMVCMSSVIAIIGSMLILHLKQRVPISDQHFELDTLYLEDISVILCVVIVFNLKLNLLTYYRLERK
YDGCTPGCKACFYILKIIIIILPFVFTFGCYNAIFLKYHQLQKKVSIPDPLYYFYTSWLVNMEMLGVFLV
FFPTFINLIEFSQFIKTVPKPIWLCQENMREDDAIRHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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